NP-MRD: Showing NP-Card for saccharothriotide D (NP0352012)

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Record Information

Version

2.0

Created at

2025-12-12 17:48:04 UTC

Updated at

2026-01-18 21:35:20 UTC

NP-MRD ID

NP0352012

Natural Product DOI

https://doi.org/10.57994/5085

Secondary Accession Numbers

None

Natural Product Identification

Common Name

saccharothriotide D

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01102315062D          

 28 28  0  0  1  0            999 V2000
    0.9059   -3.7638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309   -3.7638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.0493    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9684   -3.0493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -2.3349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -3.7638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309   -2.3349    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.6204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309   -0.9059    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9059   -0.9059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4934   -0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9059    0.5230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309    0.5230    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.1914    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684   -0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    0.5230    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9684    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9059    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059    0.5230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -0.9059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684   -1.6204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -4.4783    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  3  7  1  1  0  0  0
  7  8  1  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 16 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 15 26  2  0  0  0  0
  8 27  2  0  0  0  0
  2 28  2  0  0  0  0
M  END


  Mrv2104 01102315062D          

 28 28  0  0  1  0            999 V2000
    0.9059   -3.7638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309   -3.7638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.0493    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9684   -3.0493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -2.3349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -3.7638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309   -2.3349    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.6204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309   -0.9059    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9059   -0.9059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4934   -0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9059    0.5230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309    0.5230    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.1914    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684   -0.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    0.5230    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9684    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9059    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059    0.5230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2059    1.9520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809   -0.9059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9684   -1.6204    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -4.4783    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  3  7  1  1  0  0  0
  7  8  1  0  0  0  0
  9  8  1  6  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 16 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 15 26  2  0  0  0  0
  8 27  2  0  0  0  0
  2 28  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0352012

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)CC[C@H](CC(O)=O)C(=O)N1NCCC[C@H]1C(=O)N[C@@H](C(C)C)C(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H35N3O5/c1-12(2)8-9-15(11-17(25)26)20(28)23-16(7-6-10-21-23)19(27)22-18(13(3)4)14(5)24/h12-13,15-16,18,21H,6-11H2,1-5H3,(H,22,27)(H,25,26)/t15-,16+,18+/m1/s1

> <INCHI_KEY>
GRCOSRXJGVWXHO-RYRKJORJSA-N

> <FORMULA>
C20H35N3O5

> <MOLECULAR_WEIGHT>
397.516

> <EXACT_MASS>
397.257671239

$$$$

HEADER    PROTEIN                                 10-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-JAN-23         0                                  
HETATM    1  C   UNK     0       1.691  -7.026   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.231  -7.026   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.001  -5.692   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.541  -5.692   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.311  -4.358   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.311  -7.026   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       3.231  -4.358   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       4.001  -3.025   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.231  -1.691   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.691  -1.691   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.921  -0.357   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.691   0.976   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       3.231   0.976   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       4.001  -0.357   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       5.541  -0.357   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.311   0.976   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.541   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.231   3.644   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.691   3.644   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.001   4.977   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.851   0.976   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.621   2.310   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.851   3.644   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      10.161   2.310   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       6.311  -1.691   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       5.541  -3.025   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       4.001  -8.359   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   28                                                  
CONECT    3    2    4    7                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4                                                            
CONECT    7    3    8                                                       
CONECT    8    7    9   27                                                  
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    9   15                                                  
CONECT   15   14   16   26                                                  
CONECT   16   15   17   22                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22   16   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
CONECT   26   15                                                            
CONECT   27    8                                                            
CONECT   28    2                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₅N₃O₅

Average Mass

397.5160 Da

Monoisotopic Mass

397.25767 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(C)CC[C@H](CC(O)=O)C(=O)N1NCCC[C@H]1C(=O)N[C@@H](C(C)C)C(C)=O

InChI Identifier

InChI=1S/C20H35N3O5/c1-12(2)8-9-15(11-17(25)26)20(28)23-16(7-6-10-21-23)19(27)22-18(13(3)4)14(5)24/h12-13,15-16,18,21H,6-11H2,1-5H3,(H,22,27)(H,25,26)/t15-,16+,18+/m1/s1

InChI Key

GRCOSRXJGVWXHO-RYRKJORJSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	liushaowei3535@163.com	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	liushaowei3535	2025-12-12	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	liushaowei3535@163.com	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	liushaowei3535	2025-12-12	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	liushaowei3535@163.com	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	liushaowei3535	2025-12-12	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	liushaowei3535@163.com	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	liushaowei3535	2025-12-12	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	liushaowei3535@163.com	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	liushaowei3535	2025-12-12	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	liushaowei3535@163.com	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	liushaowei3535	2025-12-12	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	liushaowei3535@163.com	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	liushaowei3535	2025-12-12	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

Not Available

References

General References

Showing NP-Card for saccharothriotide D (NP0352012)

MOL for NP0352012 (saccharothriotide D)

3D MOL for NP0352012 (saccharothriotide D)

3D SDF for NP0352012 (saccharothriotide D)

3D-SDF for NP0352012 (saccharothriotide D)

PDB for NP0352012 (saccharothriotide D)

3D PDB for NP0352012 (saccharothriotide D)

SMILES for NP0352012 (saccharothriotide D)

INCHI for NP0352012 (saccharothriotide D)

Structure for NP0352012 (saccharothriotide D)

3D Structure for NP0352012 (saccharothriotide D)