NP-MRD: Showing NP-Card for odyverdiene B (NP0351899)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2025-11-20 21:49:14 UTC

Updated at

2025-11-21 01:01:13 UTC

NP-MRD ID

NP0351899

Natural Product DOI

https://doi.org/10.57994/4970

Secondary Accession Numbers

None

Natural Product Identification

Common Name

odyverdiene B

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05272315012D          

 24 26  0  0  1  0            999 V2000
    1.7874    1.7775    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4520    1.2886    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1808    1.6753    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9375    1.3467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1523    0.5501    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3415    0.7022    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9723    0.4591    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4611    1.1237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3034   -0.2965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8146   -0.9611    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9947   -0.8701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5059   -1.5347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8370   -2.2903    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6859   -1.4437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6635   -0.1145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4835   -0.2055    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8392   -0.1467    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2582   -0.8573    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3000    0.4778    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0965    0.6926    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    0.1580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6087   -0.6641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4119   -0.8524    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4810   -1.6745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 15 11  1  0  0  0  0
 15  5  1  0  0  0  0
 15 16  1  6  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19  2  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  0  0  0  0
 17 23  1  0  0  0  0
 23 24  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0351899

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]12CC[C@@H](C)[C@@]1([H])[C@]1([H])[C@H](CC[C@H](C)[C@@]1([H])CCC2=C)C(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C20H32/c1-12(2)16-9-6-14(4)18-10-7-13(3)17-11-8-15(5)19(17)20(16)18/h14-20H,1,3,6-11H2,2,4-5H3/t14-,15+,16+,17-,18+,19+,20+/m0/s1

> <INCHI_KEY>
NPKVXLFBUMPVHH-VGWIFYLRSA-N

> <FORMULA>
C20H32

> <MOLECULAR_WEIGHT>
272.476

> <EXACT_MASS>
272.25040103

$$$$

HEADER    PROTEIN                                 27-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-23         0                                  
HETATM    1  C   UNK     0       3.337   3.318   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.577   2.405   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.937   3.127   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.350   2.514   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.751   1.027   0.000  0.00  0.00           C+0
HETATM    6  H   UNK     0       6.237   1.311   0.000  0.00  0.00           H+0
HETATM    7  C   UNK     0       9.282   0.857   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.194   2.098   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.900  -0.553   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.987  -1.794   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.457  -1.624   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.544  -2.865   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.162  -4.275   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.014  -2.695   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.839  -0.214   0.000  0.00  0.00           C+0
HETATM   16  H   UNK     0       8.369  -0.384   0.000  0.00  0.00           H+0
HETATM   17  C   UNK     0       5.300  -0.274   0.000  0.00  0.00           C+0
HETATM   18  H   UNK     0       6.082  -1.600   0.000  0.00  0.00           H+0
HETATM   19  C   UNK     0       4.293   0.892   0.000  0.00  0.00           C+0
HETATM   20  H   UNK     0       5.780   1.293   0.000  0.00  0.00           H+0
HETATM   21  C   UNK     0       2.874   0.295   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.003  -1.240   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.502  -1.591   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.631  -3.126   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7   15                                             
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   15                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   11    5   16   17                                             
CONECT   16   15                                                            
CONECT   17   15   18   19   23                                             
CONECT   18   17                                                            
CONECT   19   17    2   20   21                                             
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   17   24                                                  
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂

Average Mass

272.4760 Da

Monoisotopic Mass

272.25040 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

[H][C@@]12CC[C@@H](C)[C@@]1([H])[C@]1([H])[C@H](CC[C@H](C)[C@@]1([H])CCC2=C)C(C)=C

InChI Identifier

InChI=1S/C20H32/c1-12(2)16-9-6-14(4)18-10-7-13(3)17-11-8-15(5)19(17)20(16)18/h14-20H,1,3,6-11H2,2,4-5H3/t14-,15+,16+,17-,18+,19+,20+/m0/s1

InChI Key

NPKVXLFBUMPVHH-VGWIFYLRSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, CDCl3, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2025-11-20	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp. ND90		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

Not Available

References

General References

Showing NP-Card for odyverdiene B (NP0351899)

MOL for NP0351899 (odyverdiene B)

3D MOL for NP0351899 (odyverdiene B)

3D SDF for NP0351899 (odyverdiene B)

3D-SDF for NP0351899 (odyverdiene B)

PDB for NP0351899 (odyverdiene B)

3D PDB for NP0351899 (odyverdiene B)

SMILES for NP0351899 (odyverdiene B)

INCHI for NP0351899 (odyverdiene B)

Structure for NP0351899 (odyverdiene B)

3D Structure for NP0351899 (odyverdiene B)