NP-MRD: Showing NP-Card for nordiplocin (NP0351546)

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Record Information

Version

2.0

Created at

2025-09-14 04:01:54 UTC

Updated at

2025-10-07 03:35:30 UTC

NP-MRD ID

NP0351546

Natural Product DOI

https://doi.org/10.57994/4593

Secondary Accession Numbers

None

Natural Product Identification

Common Name

nordiplocin

Description

Based on a literature review very few articles have been published on nordiplocin.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 03202321132D          

 23 25  0  0  0  0            999 V2000
    4.5741    3.0436    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2162    2.3003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7305    1.6553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5189    1.8985    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7025    2.7028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1237    1.3373    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9120    1.5805    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    5.9401    0.5330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5448   -0.0281    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1517    0.2898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9682   -0.5145    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    4.5470    0.8510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8037    0.4930    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0604    0.8510    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4556    0.2898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6673    0.5330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0625   -0.0281    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    1.4837    1.3373    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6953    1.5805    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0884    1.8985    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9049    2.7028    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.8768    1.6553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3912    2.3003    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
  3 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  0  0  0  0
 14 22  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
  2 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0351546

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C2C(OC3=C(OC2=O)C(Cl)=C(O)C(Cl)=C3)=C(Cl)C(O)=C1Cl

> <INCHI_IDENTIFIER>
InChI=1S/C14H6Cl4O5/c1-3-6-13(9(18)11(20)7(3)16)22-5-2-4(15)10(19)8(17)12(5)23-14(6)21/h2,19-20H,1H3

> <INCHI_KEY>
PWEKDQNVSYSNFI-UHFFFAOYSA-N

> <FORMULA>
C14H6Cl4O5

> <MOLECULAR_WEIGHT>
396.0

> <EXACT_MASS>
393.8969341

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
33.73981167753081

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5,7,13,15-tetrachloro-6,14-dihydroxy-12-methyl-2,9-dioxatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3(8),4,6,11,13-hexaen-10-one

> <JCHEM_LOGP>
5.2841920469999994

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.410709941397021

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.368201774449131

> <JCHEM_PKA_STRONGEST_BASIC>
-3.819610133430124

> <JCHEM_POLAR_SURFACE_AREA>
75.99000000000001

> <JCHEM_REFRACTIVITY>
86.2659

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
5,7,13,15-tetrachloro-6,14-dihydroxy-12-methyl-2,9-dioxatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3(8),4,6,11,13-hexaen-10-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-MAR-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-MAR-23         0                                  
HETATM    1  O   UNK     0       8.538   5.681   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       7.870   4.294   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.830   3.090   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.302   3.544   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.645   5.045   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.431   2.496   0.000  0.00  0.00           C+0
HETATM    7 Cl   UNK     0      12.902   2.950   0.000  0.00  0.00          Cl+0
HETATM    8  C   UNK     0      11.088   0.995   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      12.217  -0.053   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       9.617   0.541   0.000  0.00  0.00           C+0
HETATM   11 Cl   UNK     0       9.274  -0.960   0.000  0.00  0.00          Cl+0
HETATM   12  C   UNK     0       8.488   1.588   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       7.100   0.920   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       5.713   1.588   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.584   0.541   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.112   0.995   0.000  0.00  0.00           C+0
HETATM   17 Cl   UNK     0       1.983  -0.053   0.000  0.00  0.00          Cl+0
HETATM   18  C   UNK     0       2.770   2.496   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.298   2.950   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       3.898   3.544   0.000  0.00  0.00           C+0
HETATM   21 Cl   UNK     0       3.556   5.045   0.000  0.00  0.00          Cl+0
HETATM   22  C   UNK     0       5.370   3.090   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.330   4.294   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   23                                                  
CONECT    3    2    4   12                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    3   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   22                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   14   20   23                                                  
CONECT   23   22    2                                                       
MASTER        0    0    0    0    0    0    0    0   23    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₄H₆Cl₄O₅

Average Mass

396.0000 Da

Monoisotopic Mass

393.89693 Da

IUPAC Name

5,7,13,15-tetrachloro-6,14-dihydroxy-12-methyl-2,9-dioxatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3(8),4,6,11,13-hexaen-10-one

Traditional Name

5,7,13,15-tetrachloro-6,14-dihydroxy-12-methyl-2,9-dioxatricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3(8),4,6,11,13-hexaen-10-one

CAS Registry Number

Not Available

SMILES

CC1=C2C(OC3=C(OC2=O)C(Cl)=C(O)C(Cl)=C3)=C(Cl)C(O)=C1Cl

InChI Identifier

InChI=1S/C14H6Cl4O5/c1-3-6-13(9(18)11(20)7(3)16)22-5-2-4(15)10(19)8(17)12(5)23-14(6)21/h2,19-20H,1H3

InChI Key

PWEKDQNVSYSNFI-UHFFFAOYSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 700 MHz, C2D6OS, experimental)	2397199846@qq.com	State Key Laboratory of Tropical Oceanography, Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China	Liu Yang	2025-09-14	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 700 MHz, C2D6OS, experimental)	2397199846@qq.com	State Key Laboratory of Tropical Oceanography, Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China	Liu Yang	2025-09-14	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, C2D6OS, experimental)	2397199846@qq.com	State Key Laboratory of Tropical Oceanography, Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China	Liu Yang	2025-09-14	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, C2D6OS, experimental)	2397199846@qq.com	State Key Laboratory of Tropical Oceanography, Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China	Liu Yang	2025-09-14	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
sp. Aspergillus		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.28	ChemAxon
pKa (Strongest Acidic)	5.37	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	75.99 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	86.27 m³·mol⁻¹	ChemAxon
Polarizability	33.74 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for nordiplocin (NP0351546)

MOL for NP0351546 (nordiplocin)

3D MOL for NP0351546 (nordiplocin)

3D SDF for NP0351546 (nordiplocin)

3D-SDF for NP0351546 (nordiplocin)

PDB for NP0351546 (nordiplocin)

3D PDB for NP0351546 (nordiplocin)

SMILES for NP0351546 (nordiplocin)

INCHI for NP0351546 (nordiplocin)

Structure for NP0351546 (nordiplocin)

3D Structure for NP0351546 (nordiplocin)