NP-MRD: Showing NP-Card for Oreonudine D (NP0351498)

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Record Information

Version

2.0

Created at

2025-08-31 01:56:08 UTC

Updated at

2025-12-05 03:36:46 UTC

NP-MRD ID

NP0351498

Natural Product DOI

https://doi.org/10.57994/4545

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Oreonudine D

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 03062319072D          

 27 30  0  0  1  0            999 V2000
    4.6474    1.2253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3875    0.8609    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    5.7519    1.6010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0230    0.1207    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.1276    0.4964    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1821   -0.3268    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9474   -0.6349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1837   -1.4253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7130   -2.1029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8898   -2.1573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3339   -1.5477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5634   -1.8424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9229   -1.3224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0530   -0.5077    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8235   -0.2130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4640   -0.7330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3184   -0.1322    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7343   -0.7148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1079   -1.4504    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9863   -1.6159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5527   -1.0161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3165   -0.2256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8829    0.3742    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6466    1.1646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5138   -0.0350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3554   -1.2067    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5917   -1.9971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
  6 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 13 19  1  0  0  0  0
  8 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  2  0  0  0  0
  7 25  1  0  0  0  0
 21 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  CHG  2   2   1   4  -1
M  END


  Mrv2104 03062319072D          

 27 30  0  0  1  0            999 V2000
    4.6474    1.2253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3875    0.8609    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    5.7519    1.6010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0230    0.1207    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.1276    0.4964    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1821   -0.3268    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.9474   -0.6349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1837   -1.4253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7130   -2.1029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8898   -2.1573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3339   -1.5477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5634   -1.8424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9229   -1.3224    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0530   -0.5077    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8235   -0.2130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4640   -0.7330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3184   -0.1322    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7343   -0.7148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1079   -1.4504    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9863   -1.6159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5527   -1.0161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3165   -0.2256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8829    0.3742    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6466    1.1646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5138   -0.0350    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3554   -1.2067    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5917   -1.9971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
  6 16  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 13 19  1  0  0  0  0
  8 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  2  0  0  0  0
  7 25  1  0  0  0  0
 21 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  CHG  2   2   1   4  -1
M  END
> <DATABASE_ID>
NP0351498

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C(C=C1OC)[C@H](C[N+](C)(C)[O-])C1=CC3=C(OCO3)C=C1C=C2

> <INCHI_IDENTIFIER>
InChI=1S/C21H23NO5/c1-22(2,23)11-17-15-9-19(25-4)18(24-3)7-13(15)5-6-14-8-20-21(10-16(14)17)27-12-26-20/h5-10,17H,11-12H2,1-4H3/t17-/m0/s1

> <INCHI_KEY>
QVNATRSWZUJOKR-KRWDZBQOSA-N

> <FORMULA>
C21H23NO5

> <MOLECULAR_WEIGHT>
369.417

> <EXACT_MASS>
369.157622845

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
39.86823866429351

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1-[(2S)-5,6-dimethoxy-14,16-dioxatetracyclo[9.7.0.0^{3,8}.0^{13,17}]octadeca-1(18),3(8),4,6,9,11,13(17)-heptaen-2-yl]-N,N-dimethylmethanamine oxide

> <JCHEM_LOGP>
2.252191559333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
4.321615992847411

> <JCHEM_POLAR_SURFACE_AREA>
59.980000000000004

> <JCHEM_REFRACTIVITY>
104.05730000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
1-[(2S)-5,6-dimethoxy-14,16-dioxatetracyclo[9.7.0.0^{3,8}.0^{13,17}]octadeca-1(18),3(8),4,6,9,11,13(17)-heptaen-2-yl]-N,N-dimethylmethanamine oxide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAR-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAR-23         0                                  
HETATM    1  C   UNK     0       8.675   2.287   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0      10.057   1.607   0.000  0.00  0.00           N+1
HETATM    3  C   UNK     0      10.737   2.989   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       9.376   0.225   0.000  0.00  0.00           O-1
HETATM    5  C   UNK     0      11.438   0.927   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.540  -0.610   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.968  -1.185   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.409  -2.661   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.531  -3.925   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.994  -4.027   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.957  -2.889   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.518  -3.439   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.323  -2.468   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.566  -0.948   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.004  -0.398   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.200  -1.368   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       6.194  -0.247   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       5.104  -1.334   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.801  -2.707   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      14.908  -3.016   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.965  -1.897   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      15.524  -0.421   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      16.581   0.698   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      16.140   2.174   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      14.026  -0.065   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      17.463  -2.253   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      17.904  -3.728   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4    5                                             
CONECT    3    2                                                            
CONECT    4    2                                                            
CONECT    5    2    6                                                       
CONECT    6    5    7   16                                                  
CONECT    7    6    8   25                                                  
CONECT    8    7    9   20                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   19                                                  
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15   11    6                                                  
CONECT   17   14   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   13                                                       
CONECT   20    8   21                                                       
CONECT   21   20   22   26                                                  
CONECT   22   21   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23                                                            
CONECT   25   22    7                                                       
CONECT   26   21   27                                                       
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₃NO₅

Average Mass

369.4170 Da

Monoisotopic Mass

369.15762 Da

IUPAC Name

1-[(2S)-5,6-dimethoxy-14,16-dioxatetracyclo[9.7.0.0^{3,8}.0^{13,17}]octadeca-1(18),3(8),4,6,9,11,13(17)-heptaen-2-yl]-N,N-dimethylmethanamine oxide

Traditional Name

1-[(2S)-5,6-dimethoxy-14,16-dioxatetracyclo[9.7.0.0^{3,8}.0^{13,17}]octadeca-1(18),3(8),4,6,9,11,13(17)-heptaen-2-yl]-N,N-dimethylmethanamine oxide

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(C=C1OC)[C@H](C[N+](C)(C)[O-])C1=CC3=C(OCO3)C=C1C=C2

InChI Identifier

InChI=1S/C21H23NO5/c1-22(2,23)11-17-15-9-19(25-4)18(24-3)7-13(15)5-6-14-8-20-21(10-16(14)17)27-12-26-20/h5-10,17H,11-12H2,1-4H3/t17-/m0/s1

InChI Key

QVNATRSWZUJOKR-KRWDZBQOSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, CDCl3, experimental)	[email protected]	NCI-Frederick	Dong Wang	2025-08-31	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, CDCl3, experimental)	[email protected]	NCI-Frederick	Dong Wang	2025-08-31	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, CDCl3, experimental)	[email protected]	NCI-Frederick	Dong Wang	2025-08-31	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, CDCl3, experimental)	[email protected]	NCI-Frederick	Dong Wang	2025-08-31	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CDCl3, experimental)	[email protected]	NCI-Frederick	Dong Wang	2025-08-31	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Oreomecon nudicaulis		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.25	ChemAxon
pKa (Strongest Basic)	4.32	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	59.98 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	104.06 m³·mol⁻¹	ChemAxon
Polarizability	39.87 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Oreonudine D (NP0351498)

MOL for NP0351498 (Oreonudine D)

3D MOL for NP0351498 (Oreonudine D)

3D SDF for NP0351498 (Oreonudine D)

3D-SDF for NP0351498 (Oreonudine D)

PDB for NP0351498 (Oreonudine D)

3D PDB for NP0351498 (Oreonudine D)

SMILES for NP0351498 (Oreonudine D)

INCHI for NP0351498 (Oreonudine D)

Structure for NP0351498 (Oreonudine D)

3D Structure for NP0351498 (Oreonudine D)