| Record Information |
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| Version | 2.0 |
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| Created at | 2025-04-23 19:46:25 UTC |
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| Updated at | 2025-06-11 05:37:04 UTC |
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| NP-MRD ID | NP0350969 |
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| Natural Product DOI | https://doi.org/10.57994/3955 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | (3S,6S,9S,12S,15S,18S)-15-((1H-indol-3-yl)methyl)-3,6,9,12-tetrabenzyl-18-isobutyl-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexaone |
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| Description | (3S,6S,9S,12S,15S,18S)-15-((1H-indol-3-yl)methyl)-3,6,9,12-tetrabenzyl-18-isobutyl-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexaone belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Based on a literature review very few articles have been published on (3S,6S,9S,12S,15S,18S)-15-((1H-indol-3-yl)methyl)-3,6,9,12-tetrabenzyl-18-isobutyl-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexaone. |
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| Structure | CC(C)C[C@@H]1OC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CNC3=C2C=CC=C3)NC1=O InChI=1S/C53H56N6O7/c1-34(2)27-47-52(64)58-45(32-39-33-54-41-26-16-15-25-40(39)41)51(63)57-43(29-36-19-9-4-10-20-36)49(61)55-42(28-35-17-7-3-8-18-35)48(60)56-44(30-37-21-11-5-12-22-37)50(62)59-46(53(65)66-47)31-38-23-13-6-14-24-38/h3-26,33-34,42-47,54H,27-32H2,1-2H3,(H,55,61)(H,56,60)(H,57,63)(H,58,64)(H,59,62)/t42-,43-,44-,45-,46-,47-/m0/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C53H56N6O7 |
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| Average Mass | 889.0660 Da |
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| Monoisotopic Mass | 888.42105 Da |
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| IUPAC Name | (3S,6S,9S,12S,15S,18S)-3,6,9,12-tetrabenzyl-15-[(1H-indol-3-yl)methyl]-18-(2-methylpropyl)-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexone |
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| Traditional Name | (3S,6S,9S,12S,15S,18S)-3,6,9,12-tetrabenzyl-15-(1H-indol-3-ylmethyl)-18-(2-methylpropyl)-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexone |
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| CAS Registry Number | Not Available |
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| SMILES | CC(C)C[C@@H]1OC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CNC3=C2C=CC=C3)NC1=O |
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| InChI Identifier | InChI=1S/C53H56N6O7/c1-34(2)27-47-52(64)58-45(32-39-33-54-41-26-16-15-25-40(39)41)51(63)57-43(29-36-19-9-4-10-20-36)49(61)55-42(28-35-17-7-3-8-18-35)48(60)56-44(30-37-21-11-5-12-22-37)50(62)59-46(53(65)66-47)31-38-23-13-6-14-24-38/h3-26,33-34,42-47,54H,27-32H2,1-2H3,(H,55,61)(H,56,60)(H,57,63)(H,58,64)(H,59,62)/t42-,43-,44-,45-,46-,47-/m0/s1 |
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| InChI Key | WMAOPYMZJOQJJH-FQEQRRFLSA-N |
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| Experimental Spectra |
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| | Spectrum Type | Description | Depositor Email | Depositor Organization | Depositor | Deposition Date | View |
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| TOCSY NMR | [1H, 1H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum | | COSY NMR | [1H, 1H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum | | NOESY NMR | [1H, 1H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum | | HSQC NMR | [1H, 13C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum | | HMBC NMR | [1H, 13C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, C2D6OS, experimental) | seetharamsing.b@ntu.edu.sg | Nanyang Technological University | Balamkundu Seetharamsing | 2025-04-23 | View Spectrum |
| | Predicted Spectra |
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| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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| | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | Not Available |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. |
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| Kingdom | Organic compounds |
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| Super Class | Organic acids and derivatives |
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| Class | Peptidomimetics |
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| Sub Class | Depsipeptides |
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| Direct Parent | Cyclic depsipeptides |
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| Alternative Parents | |
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| Substituents | - Cyclic depsipeptide
- N-acyl-alpha amino acid or derivatives
- Macrolactam
- Alpha-amino acid ester
- Triptan
- Alpha-amino acid amide
- Alpha-amino acid or derivatives
- N-substituted-alpha-amino acid
- Indole or derivatives
- Indole
- Fatty acid ester
- Fatty acyl
- Benzenoid
- N-acyl-amine
- Fatty amide
- Monocyclic benzene moiety
- Heteroaromatic compound
- Pyrroline
- Pyrrole
- Lactone
- Lactam
- Carboxylic acid ester
- Carboxamide group
- Amino acid or derivatives
- Oxacycle
- Azacycle
- Organoheterocyclic compound
- Secondary amine
- Monocarboxylic acid or derivatives
- Secondary aliphatic amine
- Carboxylic acid derivative
- Organic nitrogen compound
- Organic oxygen compound
- Organopnictogen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Organonitrogen compound
- Amine
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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