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Record Information
Version2.0
Created at2025-04-23 19:46:25 UTC
Updated at2025-06-11 05:37:04 UTC
NP-MRD IDNP0350969
Natural Product DOIhttps://doi.org/10.57994/3955
Secondary Accession NumbersNone
Natural Product Identification
Common Name(3S,6S,9S,12S,15S,18S)-15-((1H-indol-3-yl)methyl)-3,6,9,12-tetrabenzyl-18-isobutyl-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexaone
Description(3S,6S,9S,12S,15S,18S)-15-((1H-indol-3-yl)methyl)-3,6,9,12-tetrabenzyl-18-isobutyl-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexaone belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Based on a literature review very few articles have been published on (3S,6S,9S,12S,15S,18S)-15-((1H-indol-3-yl)methyl)-3,6,9,12-tetrabenzyl-18-isobutyl-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexaone.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC53H56N6O7
Average Mass889.0660 Da
Monoisotopic Mass888.42105 Da
IUPAC Name(3S,6S,9S,12S,15S,18S)-3,6,9,12-tetrabenzyl-15-[(1H-indol-3-yl)methyl]-18-(2-methylpropyl)-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexone
Traditional Name(3S,6S,9S,12S,15S,18S)-3,6,9,12-tetrabenzyl-15-(1H-indol-3-ylmethyl)-18-(2-methylpropyl)-1-oxa-4,7,10,13,16-pentaazacyclooctadecane-2,5,8,11,14,17-hexone
CAS Registry NumberNot Available
SMILES
CC(C)C[C@@H]1OC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CC=CC=C2)NC(=O)[C@H](CC2=CNC3=C2C=CC=C3)NC1=O
InChI Identifier
InChI=1S/C53H56N6O7/c1-34(2)27-47-52(64)58-45(32-39-33-54-41-26-16-15-25-40(39)41)51(63)57-43(29-36-19-9-4-10-20-36)49(61)55-42(28-35-17-7-3-8-18-35)48(60)56-44(30-37-21-11-5-12-22-37)50(62)59-46(53(65)66-47)31-38-23-13-6-14-24-38/h3-26,33-34,42-47,54H,27-32H2,1-2H3,(H,55,61)(H,56,60)(H,57,63)(H,58,64)(H,59,62)/t42-,43-,44-,45-,46-,47-/m0/s1
InChI KeyWMAOPYMZJOQJJH-FQEQRRFLSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
TOCSY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
NOESY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, C2D6OS, experimental)seetharamsing.b@ntu.edu.sgNanyang Technological UniversityBalamkundu Seetharamsing2025-04-23View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassDepsipeptides
Direct ParentCyclic depsipeptides
Alternative Parents
Substituents
  • Cyclic depsipeptide
  • N-acyl-alpha amino acid or derivatives
  • Macrolactam
  • Alpha-amino acid ester
  • Triptan
  • Alpha-amino acid amide
  • Alpha-amino acid or derivatives
  • N-substituted-alpha-amino acid
  • Indole or derivatives
  • Indole
  • Fatty acid ester
  • Fatty acyl
  • Benzenoid
  • N-acyl-amine
  • Fatty amide
  • Monocyclic benzene moiety
  • Heteroaromatic compound
  • Pyrroline
  • Pyrrole
  • Lactone
  • Lactam
  • Carboxylic acid ester
  • Carboxamide group
  • Amino acid or derivatives
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Secondary amine
  • Monocarboxylic acid or derivatives
  • Secondary aliphatic amine
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP7.14ChemAxon
pKa (Strongest Acidic)10.41ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area187.59 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity249.69 m³·mol⁻¹ChemAxon
Polarizability95.25 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound170990028
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References