Np mrd loader

Record Information
Version2.0
Created at2025-04-08 15:58:30 UTC
Updated at2025-07-24 18:35:59 UTC
NP-MRD IDNP0350923
Natural Product DOIhttps://doi.org/10.57994/3908
Secondary Accession NumbersNone
Natural Product Identification
Common NameComp5
Description Comp5 was first documented in 2021 (PMID: 33495861). Based on a literature review a small amount of articles have been published on Comp5 (PMID: 39615602) (PMID: 38114011) (PMID: 37702159) (PMID: 36816262).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC24H30N6O4
Average Mass466.5420 Da
Monoisotopic Mass466.23285 Da
IUPAC NameN-{N-[(1S,4S,7S,10S,12R)-12-hydroxy-1-(2-methylbut-3-en-2-yl)-3,9-dioxo-2,8,19-triazapentacyclo[10.7.0.0^{2,10}.0^{4,8}.0^{13,18}]nonadeca-13(18),14,16-trien-7-yl]carbamimidoyl}acetamide
Traditional NameN-{N-[(1S,4S,7S,10S,12R)-12-hydroxy-1-(2-methylbut-3-en-2-yl)-3,9-dioxo-2,8,19-triazapentacyclo[10.7.0.0^{2,10}.0^{4,8}.0^{13,18}]nonadeca-13(18),14,16-trien-7-yl]carbamimidoyl}acetamide
CAS Registry NumberNot Available
SMILES
CC(=O)NC(=N)N[C@@H]1CC[C@@H]2N1C(=O)[C@@H]1C[C@@]3(O)C4=C(N[C@]3(N1C2=O)C(C)(C)C=C)C=CC=C4
InChI Identifier
InChI=1S/C24H30N6O4/c1-5-22(3,4)24-23(34,14-8-6-7-9-15(14)28-24)12-17-19(32)29-16(20(33)30(17)24)10-11-18(29)27-21(25)26-13(2)31/h5-9,16-18,28,34H,1,10-12H2,2-4H3,(H3,25,26,27,31)/t16-,17-,18-,23+,24-/m0/s1
InChI KeyUDOLCGIXLAJSQO-HRWDQCIQSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
HMBC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C2D6OS, experimental)niwakanji0218@gmail.comUniversity of California, Los AngelesKanji Niwa2025-04-08View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C2D6OS, experimental)niwakanji0218@gmail.comUniversity of California, Los AngelesKanji Niwa2025-04-08View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C2D6OS, experimental)niwakanji0218@gmail.comUniversity of California, Los AngelesKanji Niwa2025-04-08View Spectrum
ROESY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C2D6OS, experimental)niwakanji0218@gmail.comUniversity of California, Los AngelesKanji Niwa2025-04-08View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C2D6OS, experimental)niwakanji0218@gmail.comUniversity of California, Los AngelesKanji Niwa2025-04-08View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, C2D6OS, experimental)niwakanji0218@gmail.comUniversity of California, Los AngelesKanji Niwa2025-04-08View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.5ChemAxon
pKa (Strongest Acidic)11.4ChemAxon
pKa (Strongest Basic)8.08ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count5ChemAxon
Polar Surface Area137.86 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity134.61 m³·mol⁻¹ChemAxon
Polarizability48.79 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Krol W, Machelak W, Zielinska M: Positive allosteric modulation of micro-opioid receptor - A new possible approach in the pain management? Biochem Pharmacol. 2025 Feb;232:116686. doi: 10.1016/j.bcp.2024.116686. Epub 2024 Nov 28. [PubMed:39615602 ]
  2. Waqas M, Ullah S, Halim SA, Rehman NU, Ali A, Jan A, Muhsinah AB, Khan A, Al-Harrasi A: Targeting papain-like protease by natural products as novel therapeutic potential SARS-CoV-2. Int J Biol Macromol. 2024 Feb;258(Pt 1):128812. doi: 10.1016/j.ijbiomac.2023.128812. Epub 2023 Dec 17. [PubMed:38114011 ]
  3. Naskar A, Bhanja KK, Roy RK, Patra N: Structural insight into G2019S mutated LRRK2 kinase and brain-penetrant type I inhibitor complex: a molecular dynamics approach. J Biomol Struct Dyn. 2024;42(19):10129-10149. doi: 10.1080/07391102.2023.2255675. Epub 2023 Sep 13. [PubMed:37702159 ]
  4. Rampogu S, Shaik B, Kim JH, Jung TS, Ha MW, Lee KW: Explicit molecular dynamics simulation studies to discover novel natural compound analogues as Mycobacterium tuberculosis inhibitors. Heliyon. 2023 Jan 30;9(2):e13324. doi: 10.1016/j.heliyon.2023.e13324. eCollection 2023 Feb. [PubMed:36816262 ]
  5. Khan S, Fakhar Z, Ahmad A: Targeting ebola virus VP40 protein through novel inhibitors: exploring the structural and dynamic perspectives on molecular landscapes. J Mol Model. 2021 Jan 25;27(2):49. doi: 10.1007/s00894-021-04682-8. [PubMed:33495861 ]