Np mrd loader

Record Information
Version2.0
Created at2025-03-11 18:45:34 UTC
Updated at2025-10-22 19:37:40 UTC
NP-MRD IDNP0350823
Natural Product DOIhttps://doi.org/10.57994/3807
Secondary Accession NumbersNone
Natural Product Identification
Common NameBeta-amanitin
DescriptionBeta-amanitin belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone. Beta-amanitin was first documented in 2022 (PMID: 36496736). Based on a literature review a significant number of articles have been published on Beta-amanitin (PMID: 37929913) (PMID: 36633081) (PMID: 39301580) (PMID: 39260920) (PMID: 38971475) (PMID: 38810334).
Structure
Thumb
Synonyms
ValueSource
b-AmanitinGenerator
Β-amanitinGenerator
Chemical FormulaC39H53N9O15S
Average Mass919.9600 Da
Monoisotopic Mass919.33818 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
CC[C@H](C)[C@@H]1NC(=O)CNC(=O)[C@@H]2CC3=C(NC4=C3C=CC(O)=C4)[S]([O])C[C@H](NC(=O)CNC1=O)C(=O)N[C@@H](CC(O)=O)C(=O)N1C[C@H](O)C[C@H]1C(=O)N[C@@H]([C@@H](C)[C@@H](O)CO)C(=O)N2
InChI Identifier
InChI=1S/C39H53N9O15S/c1-4-16(2)31-36(60)41-11-28(53)42-25-15-64(63)38-21(20-6-5-18(50)7-22(20)45-38)9-23(33(57)40-12-29(54)46-31)43-37(61)32(17(3)27(52)14-49)47-35(59)26-8-19(51)13-48(26)39(62)24(10-30(55)56)44-34(25)58/h5-7,16-17,19,23-27,31-32,45,49-52H,4,8-15H2,1-3H3,(H,40,57)(H,41,60)(H,42,53)(H,43,61)(H,44,58)(H,46,54)(H,47,59)(H,55,56)/t16-,17-,19+,23-,24-,25-,26-,27-,31?,32-,64?/m0/s1
InChI KeyIEQCUEXVAPAFMQ-UMVUCPTLSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
ROESY NMR[1H, 1H] NMR Spectrum (2D, 699 MHz, C2D6OS, experimental)adrien.jagora@universite-paris-saclay.frUniversité Paris-SaclayAdrien Jagora2025-03-11View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 699 MHz, C2D6OS, experimental)adrien.jagora@universite-paris-saclay.frUniversité Paris-SaclayAdrien Jagora2025-03-11View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 699 MHz, C2D6OS, experimental)adrien.jagora@universite-paris-saclay.frUniversité Paris-SaclayAdrien Jagora2025-03-11View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 699 MHz, C2D6OS, experimental)adrien.jagora@universite-paris-saclay.frUniversité Paris-SaclayAdrien Jagora2025-03-11View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, C2D6OS, experimental)adrien.jagora@universite-paris-saclay.frUniversité Paris-SaclayAdrien Jagora2025-03-11View Spectrum
1D NMR1H NMR Spectrum (1D, 699 MHz, C2D6OS, experimental)adrien.jagora@universite-paris-saclay.frUniversité Paris-SaclayAdrien Jagora2025-03-11View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Amanita phalloides
      Not Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as cyclic peptides. These are compounds containing a cyclic moiety bearing a peptide backbone.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentCyclic peptides
Alternative Parents
Substituents
  • Cyclic alpha peptide
  • Aspartic acid or derivatives
  • Alpha-amino acid amide
  • Alpha-amino acid or derivatives
  • Indole or derivatives
  • Indole
  • N-acylpyrrolidine
  • 1-hydroxy-2-unsubstituted benzenoid
  • Benzenoid
  • Substituted pyrrole
  • N-acyl-amine
  • Heteroaromatic compound
  • Cyclic carboximidic acid
  • Tertiary carboxylic acid amide
  • Pyrrolidine
  • Pyrrole
  • Amino acid
  • Sulfoxide
  • Secondary alcohol
  • Lactam
  • Carboxamide group
  • Amino acid or derivatives
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Secondary amine
  • Monocarboxylic acid or derivatives
  • Secondary aliphatic amine
  • Carboxylic acid
  • Carboximidic acid
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-6.7ChemAxon
pKa (Strongest Acidic)3.65ChemAxon
pKa (Strongest Basic)-5.5ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count15ChemAxon
Hydrogen Donor Count13ChemAxon
Polar Surface Area358.02 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity219.48 m³·mol⁻¹ChemAxon
Polarizability88.41 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkΒ-Amanitin
METLIN IDNot Available
PubChem Compound146510104
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Yang S, Wen D, Zheng F, Pu S, Chen Z, Chen M, Di B, Liu W, Shi Y: Simple and rapid detection of three amatoxins and three phallotoxins in human body fluids by UPLC-MS-MS and its application in 15 poisoning cases. J Anal Toxicol. 2024 Jan 31;48(1):44-53. doi: 10.1093/jat/bkad081. [PubMed:37929913 ]
  2. He L, Tang X, Zhao J, Yang Q, Li L: [Determination of five amanita peptide toxins in poisonous mushrooms by ultra performance liquid chromatography-quadrupole electrostatic field orbitrap high resolution mass spectrometry]. Se Pu. 2023 Jan;41(1):94-103. doi: 10.3724/SP.J.1123.2022.03010. [PubMed:36633081 ]
  3. Cao M, Luo S, Kang T, Ou S: An outbreak of Galerina sulciceps-like (Galerina cf. sulciceps) mushroom poisoning. Clin Toxicol (Phila). 2024 Nov;62(11):707-713. doi: 10.1080/15563650.2024.2402501. Epub 2024 Sep 20. [PubMed:39301580 ]
  4. Yang R, Zhao C, Ding S, Ruan J, Li D, Xiang Y, Zhou J, Su H, Li N: Label-free SELEX of aptamers for ultra-sensitive electrochemical aptasensor detection of amanitin in wild mushrooms. Anal Chim Acta. 2024 Oct 16;1326:343136. doi: 10.1016/j.aca.2024.343136. Epub 2024 Aug 20. [PubMed:39260920 ]
  5. Yang S, Wang X, Zheng F, Pei L, Liu J, Di B, Shi Y: Toxicokinetics of alpha- and beta-amanitin in mice following single and combined administrations: Simulating in vivo amatoxins processes in clinical cases. Toxicon. 2024 Aug 28;247:107839. doi: 10.1016/j.toxicon.2024.107839. Epub 2024 Jul 4. [PubMed:38971475 ]
  6. Leite M, Freitas A, Mitchell T, Barbosa J, Ramos F: Amanitin determination in bile samples by UHPLC-MS: LR-MS and HR-MS analytical performance. J Pharm Biomed Anal. 2024 Sep 1;247:116253. doi: 10.1016/j.jpba.2024.116253. Epub 2024 May 24. [PubMed:38810334 ]
  7. He Z, Li X, Feng M, Wang X, Wang Y, Chen J: Wild mushroom poisoning: A case study of amatoxin-containing mushrooms and implications for public health. Toxicon. 2024 Mar;240:107639. doi: 10.1016/j.toxicon.2024.107639. Epub 2024 Feb 3. [PubMed:38311256 ]
  8. Hof WFJ, Visser M, de Jong JJ, Rajasekar MN, Schuringa JJ, de Graaf IAM, Touw DJ, Dekkers BGJ: Unraveling Hematotoxicity of alpha-Amanitin in Cultured Hematopoietic Cells. Toxins (Basel). 2024 Jan 22;16(1):61. doi: 10.3390/toxins16010061. [PubMed:38276537 ]
  9. Zhong J, Xu P, Li H, Sun C, Tong Y, Yao Q, Yu C: Acute hepatic and kidney injury after ingestion of Lepiota brunneoincarnata: Report of 2 cases. Toxicon. 2024 Feb 23;239:107605. doi: 10.1016/j.toxicon.2024.107605. Epub 2024 Jan 4. [PubMed:38184282 ]
  10. Liu LQ, Chen JZ, Fu WS, Tang CY: [Determination of amanita peptide and tryptamine toxins in wild mushrooms by high performance liquid chromatography-tandem mass spectrometry]. Se Pu. 2023 Nov;41(11):976-985. doi: 10.3724/SP.J.1123.2023.07013. [PubMed:37968816 ]
  11. Barbosa I, Domingues C, Ramos F, Barbosa RM: Analytical methods for amatoxins: A comprehensive review. J Pharm Biomed Anal. 2023 Aug 5;232:115421. doi: 10.1016/j.jpba.2023.115421. Epub 2023 Apr 28. [PubMed:37146495 ]
  12. Nagayama T, Kamijo Y, Fukiharu T, Nguyen NH, Imai K, Takahashi I: Amatoxin poisoning caused by Galerina sulciceps, a species with no prior record of identification in Japan: a case report. Toxicon. 2023 Jun 15;229:107139. doi: 10.1016/j.toxicon.2023.107139. Epub 2023 Apr 28. [PubMed:37119858 ]
  13. Barbosa I, Domingues C, Barbosa RM, Ramos F: Amanitins in Wild Mushrooms: The Development of HPLC-UV-EC and HPLC-DAD-MS Methods for Food Safety Purposes. Foods. 2022 Dec 5;11(23):3929. doi: 10.3390/foods11233929. [PubMed:36496736 ]
  14. Mao Z, Yu Y, Sun H, Cao Y, Jiang Q, Chu C, Sun Y, Huang S, Zhang J, Chen F: Rapid detection of alpha-amanitin and beta-amanitin in rat plasma by ultra-performance liquid chromatography-tandem mass spectrometry and its application to the toxicokinetic study of Lepiota brunneoincarnata. Forensic Toxicol. 2022 Jan;40(1):111-118. doi: 10.1007/s11419-021-00607-5. Epub 2021 Dec 1. [PubMed:36454499 ]
  15. Zhou S, Guo L, Xu X, Song S, Liu L, Kuang H, Zhu Y, Xu L, Xu C: Ultrasensitive paper sensor for simultaneous detection of alpha-amanitin and beta-amanitin by the production of monoclonal antibodies. Food Chem. 2022 Dec 1;396:133660. doi: 10.1016/j.foodchem.2022.133660. Epub 2022 Jul 9. [PubMed:35839720 ]
  16. Zhang X, Cai X, Zhang X, Li R, Zhao Y: [Highly sensitive determination of three kinds of amanitins in urine and plasma by ultra performance liquid chromatography-triple quadrupole mass spectrometry coupled with immunoaffinity column clean-up]. Se Pu. 2022 May 8;40(5):443-451. doi: 10.3724/SP.J.1123.2021.08018. [PubMed:35478003 ]
  17. Bang YY, Song IS, Lee MS, Lim CH, Cho YY, Lee JY, Kang HC, Lee HS: Toxicokinetics of beta-Amanitin in Mice and In Vitro Drug-Drug Interaction Potential. Pharmaceutics. 2022 Apr 1;14(4):774. doi: 10.3390/pharmaceutics14040774. [PubMed:35456608 ]
  18. Bayram R, Yilmaz I, Yaykasli KO, Kaya E: Erdosteine reduces cytotoxicity induced by alpha- and beta-amanitin, but not gamma-amanitin, in CA3 hepatocyte cultures. Toxicon. 2022 Jul 15;213:52-58. doi: 10.1016/j.toxicon.2022.04.009. Epub 2022 Apr 17. [PubMed:35443191 ]
  19. Sarawi S, Shi YN, Lotz-Winter H, Reschke K, Bode HB, Piepenbring M: Occurrence and chemotaxonomical analysis of amatoxins in Lepiota spp. (Agaricales). Phytochemistry. 2022 Mar;195:113069. doi: 10.1016/j.phytochem.2021.113069. Epub 2021 Dec 26. [PubMed:34965486 ]
  20. DOI: 10.1021/acs.jnatprod.5c00820
  21. PMID: 41077760