Np mrd loader

Record Information
Version2.0
Created at2025-03-05 14:48:46 UTC
Updated at2025-05-14 10:35:05 UTC
NP-MRD IDNP0350778
Natural Product DOIhttps://doi.org/10.57994/3762
Secondary Accession NumbersNone
Natural Product Identification
Common NameDracomicin B
DescriptionNot Available
Structure
Thumb
SynonymsNot Available
Chemical FormulaC84H127ClN8O31
Average Mass1780.4200 Da
Monoisotopic Mass1778.82958 Da
IUPAC Name(3S,6S,9S)-9-[(2E)-3-(4-{[(2S,3R,4R,5R,6R)-5-{[(2S,3R,4S,5S,6R)-4-{[(2S,4S,5S,6S)-5-{[(2S,4S,5S,6R)-4-amino-5-{[(2S,4S,5S,6S)-4-{[(2S,4S,5R,6S)-4-amino-5-{[(2S,3R,4R,5R,6R)-3,4-dihydroxy-5-{[(2S,4S,5S,6R)-5-hydroxy-4,6-dimethyl-4-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)but-2-enamido]-6-[(1R)-1-(5-chloro-1H-indol-3-yl)ethyl]-5,8,12-trioxo-1,4,7-triazacyclododecane-3-carboxylic acid
Traditional Name(3S,6S,9S)-9-[(2E)-3-(4-{[(2S,3R,4R,5R,6R)-5-{[(2S,3R,4S,5S,6R)-4-{[(2S,4S,5S,6S)-5-{[(2S,4S,5S,6R)-4-amino-5-{[(2S,4S,5S,6S)-4-{[(2S,4S,5R,6S)-4-amino-5-{[(2S,3R,4R,5R,6R)-3,4-dihydroxy-5-{[(2S,4S,5S,6R)-5-hydroxy-4,6-dimethyl-4-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)but-2-enamido]-6-[(1R)-1-(5-chloro-1H-indol-3-yl)ethyl]-5,8,12-trioxo-1,4,7-triazacyclododecane-3-carboxylic acid
CAS Registry NumberNot Available
SMILES
CN[C@@]1(C)C[C@H](O[C@H]2[C@@H](C)O[C@@H](O[C@H]3[C@H](C)O[C@H](C[C@]3(C)N)O[C@@]3(C)C[C@H](O[C@@H]4[C@@H](C)O[C@H](C[C@]4(C)N)O[C@H]4[C@H](C)O[C@H](C[C@]4(C)O)O[C@H]4[C@@H](O)[C@@H](C)O[C@@H](O[C@H]5[C@@H](C)O[C@@H](OC6=CC=C(C=C6)C(\C)=C\C(=O)N[C@H]6CCC(=O)NC[C@H](NC(=O)[C@@H](NC6=O)[C@H](C)C6=CNC7=CC=C(Cl)C=C67)C(O)=O)[C@H](O)[C@H]5O)[C@@H]4O)O[C@@H](C)[C@@H]3O)[C@H](O)[C@H]2O)O[C@H](C)[C@H]1O
InChI Identifier
InChI=1S/C84H127ClN8O31/c1-34(25-53(95)91-50-23-24-52(94)90-33-51(76(106)107)92-75(105)59(93-74(50)104)35(2)48-32-89-49-22-19-45(85)26-47(48)49)44-17-20-46(21-18-44)117-77-63(99)62(98)67(38(5)115-77)122-79-65(101)68(60(96)36(3)114-79)119-56-30-83(14,108)73(43(10)112-56)121-54-27-80(11,86)71(41(8)111-54)120-57-31-84(15,70(103)40(7)110-57)124-58-28-81(12,87)72(42(9)113-58)123-78-64(100)61(97)66(37(4)116-78)118-55-29-82(13,88-16)69(102)39(6)109-55/h17-22,25-26,32,35-43,50-51,54-73,77-79,88-89,96-103,108H,23-24,27-31,33,86-87H2,1-16H3,(H,90,94)(H,91,95)(H,92,105)(H,93,104)(H,106,107)/b34-25+/t35-,36-,37-,38-,39-,40+,41-,42+,43+,50+,51?,54+,55+,56+,57+,58+,59+,60+,61-,62-,63-,64-,65-,66+,67+,68+,69-,70+,71-,72+,73+,77+,78+,79+,80+,81+,82+,83+,84+/m1/s1
InChI KeyHTTIVJWVJUNWEA-XCWGFAFSSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
MLEV NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
NOESY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HSQC NMR[1H, 15N] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HMBC NMR[1H, 15N] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Amycolatopsis sp. CA-211722
      Not Available
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.2ChemAxon
pKa (Strongest Acidic)3.32ChemAxon
pKa (Strongest Basic)10.04ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count34ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area563.31 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity429.06 m³·mol⁻¹ChemAxon
Polarizability185.54 ųChemAxon
Number of Rings12ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References