Np mrd loader

Record Information
Version2.0
Created at2025-03-05 14:45:35 UTC
Updated at2025-05-14 10:35:04 UTC
NP-MRD IDNP0350777
Natural Product DOIhttps://doi.org/10.57994/3761
Secondary Accession NumbersNone
Natural Product Identification
Common NameDracomicin A
DescriptionNot Available
Structure
Thumb
SynonymsNot Available
Chemical FormulaC84H128ClN9O30
Average Mass1779.4300 Da
Monoisotopic Mass1777.84556 Da
IUPAC Name(3S,6S,9S)-9-[(2E)-3-(4-{[(2S,3R,4R,5R,6R)-5-{[(2S,3R,4S,5S,6R)-4-{[(2S,4S,5R,6S)-4-amino-5-{[(2S,4S,5S,6R)-4-amino-5-{[(2S,4S,5S,6S)-4-{[(2S,4S,5R,6S)-4-amino-5-{[(2S,3R,4R,5R,6R)-3,4-dihydroxy-5-{[(2S,4S,5S,6R)-5-hydroxy-4,6-dimethyl-4-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)but-2-enamido]-6-[(1R)-1-(5-chloro-1H-indol-3-yl)ethyl]-5,8,12-trioxo-1,4,7-triazacyclododecane-3-carboxylic acid
Traditional Name(3S,6S,9S)-9-[(2E)-3-(4-{[(2S,3R,4R,5R,6R)-5-{[(2S,3R,4S,5S,6R)-4-{[(2S,4S,5R,6S)-4-amino-5-{[(2S,4S,5S,6R)-4-amino-5-{[(2S,4S,5S,6S)-4-{[(2S,4S,5R,6S)-4-amino-5-{[(2S,3R,4R,5R,6R)-3,4-dihydroxy-5-{[(2S,4S,5S,6R)-5-hydroxy-4,6-dimethyl-4-(methylamino)oxan-2-yl]oxy}-6-methyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-5-hydroxy-4,6-dimethyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-4,6-dimethyloxan-2-yl]oxy}-3,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}phenyl)but-2-enamido]-6-[(1R)-1-(5-chloro-1H-indol-3-yl)ethyl]-5,8,12-trioxo-1,4,7-triazacyclododecane-3-carboxylic acid
CAS Registry NumberNot Available
SMILES
CN[C@@]1(C)C[C@H](O[C@H]2[C@@H](C)O[C@@H](O[C@H]3[C@H](C)O[C@H](C[C@]3(C)N)O[C@@]3(C)C[C@H](O[C@@H]4[C@@H](C)O[C@H](C[C@]4(C)N)O[C@H]4[C@H](C)O[C@H](C[C@]4(C)N)O[C@H]4[C@@H](O)[C@@H](C)O[C@@H](O[C@H]5[C@@H](C)O[C@@H](OC6=CC=C(C=C6)C(\C)=C\C(=O)N[C@H]6CCC(=O)NC[C@H](NC(=O)[C@@H](NC6=O)[C@H](C)C6=CNC7=CC=C(Cl)C=C67)C(O)=O)[C@H](O)[C@H]5O)[C@@H]4O)O[C@@H](C)[C@@H]3O)[C@H](O)[C@H]2O)O[C@H](C)[C@H]1O
InChI Identifier
InChI=1S/C84H128ClN9O30/c1-34(25-53(96)92-50-23-24-52(95)91-33-51(76(107)108)93-75(106)59(94-74(50)105)35(2)48-32-90-49-22-19-45(85)26-47(48)49)44-17-20-46(21-18-44)117-77-63(100)62(99)67(38(5)115-77)122-79-65(102)68(60(97)36(3)114-79)119-54-27-80(11,86)71(41(8)111-54)120-55-28-81(12,87)72(42(9)112-55)121-57-31-84(15,70(104)40(7)110-57)124-58-29-82(13,88)73(43(10)113-58)123-78-64(101)61(98)66(37(4)116-78)118-56-30-83(14,89-16)69(103)39(6)109-56/h17-22,25-26,32,35-43,50-51,54-73,77-79,89-90,97-104H,23-24,27-31,33,86-88H2,1-16H3,(H,91,95)(H,92,96)(H,93,106)(H,94,105)(H,107,108)/b34-25+/t35-,36-,37-,38-,39-,40+,41+,42-,43+,50+,51?,54+,55+,56+,57+,58+,59+,60+,61-,62-,63-,64-,65-,66+,67+,68+,69-,70+,71+,72-,73+,77+,78+,79+,80+,81+,82+,83+,84+/m1/s1
InChI KeyHVKZLWVBJNLCBU-GKQDCDMNSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
MLEV NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
NOESY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HSQC NMR[1H, 15N] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
HMBC NMR[1H, 15N] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, C5D5N, experimental)javier.ortiz@medinaandalucia.esFundacion MEDINAFrancisco Javier Ortiz-López2025-03-05View Spectrum
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Amycolatopsis sp. CA-211722
      Not Available
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.3ChemAxon
pKa (Strongest Acidic)3.32ChemAxon
pKa (Strongest Basic)10.15ChemAxon
Physiological Charge3ChemAxon
Hydrogen Acceptor Count34ChemAxon
Hydrogen Donor Count18ChemAxon
Polar Surface Area569.1 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity430.72 m³·mol⁻¹ChemAxon
Polarizability187.45 ųChemAxon
Number of Rings12ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References