NP-MRD: Showing NP-Card for Centratherolide-G (NP0350775)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2025-03-01 00:04:23 UTC

Updated at

2025-03-02 00:05:04 UTC

NP-MRD ID

NP0350775

Natural Product DOI

https://doi.org/10.57994/3759

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Centratherolide-G

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05292300112D          

 21 23  0  0  1  0            999 V2000
   -0.5874    0.4730    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1972    0.2181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1972   -0.6069    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6821   -1.2744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4668   -1.5293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4668   -2.3543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1812   -2.7668    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2514   -1.2744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7363   -0.6069    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7363    0.2181    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5209    0.4730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0058   -0.1944    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5209   -0.8619    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8308   -0.1944    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7759    1.2576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2514    0.8855    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7363    1.5529    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4668    1.1404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6821    0.8855    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4121   -0.1944    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1972    1.5529    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  2  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  9 13  1  6  0  0  0
 12 14  2  0  0  0  0
 11 15  2  0  0  0  0
 10 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 19 18  1  0  0  0  0
 19  2  1  0  0  0  0
 19 20  1  0  0  0  0
  4 20  1  0  0  0  0
 19 21  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0350775

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]12C[C@H](O)[C@@H]3[C@H](OC(=O)C3=C)\C=C(CO)/C(O1)=CC2=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H16O6/c1-7-13-9(17)5-15(2)12(18)4-10(21-15)8(6-16)3-11(13)20-14(7)19/h3-4,9,11,13,16-17H,1,5-6H2,2H3/b8-3-/t9-,11+,13+,15+/m0/s1

> <INCHI_KEY>
MWWAXCUUOZKNLZ-WKSQIXHXSA-N

> <FORMULA>
C15H16O6

> <MOLECULAR_WEIGHT>
292.287

> <EXACT_MASS>
292.094688235

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
28.472315441394787

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z,4R,8R,9S,11R)-9-hydroxy-2-(hydroxymethyl)-11-methyl-7-methylidene-5,14-dioxatricyclo[9.2.1.0^{4,8}]tetradeca-1(13),2-diene-6,12-dione

> <JCHEM_LOGP>
-0.42313664233333287

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.178047981718716

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.50278254806383

> <JCHEM_PKA_STRONGEST_BASIC>
-2.789550536060304

> <JCHEM_POLAR_SURFACE_AREA>
93.06

> <JCHEM_REFRACTIVITY>
74.172

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2Z,4R,8R,9S,11R)-9-hydroxy-2-(hydroxymethyl)-11-methyl-7-methylidene-5,14-dioxatricyclo[9.2.1.0^{4,8}]tetradeca-1(13),2-diene-6,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 29-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-MAY-23         0                                  
HETATM    1  O   UNK     0      -1.097   0.883   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.368   0.407   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.368  -1.133   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.273  -2.379   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.738  -2.855   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.738  -4.395   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.072  -5.165   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.203  -2.379   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.108  -1.133   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.108   0.407   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.572   0.883   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.478  -0.363   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.572  -1.609   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       9.018  -0.363   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       7.048   2.348   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.203   1.653   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.108   2.899   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.738   2.129   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.273   1.653   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       0.769  -0.363   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       0.368   2.899   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   20                                                  
CONECT    5    4    6    8                                                  
CONECT    6    5    7                                                       
CONECT    7    6                                                            
CONECT    8    5    9                                                       
CONECT    9    8   10   13                                                  
CONECT   10    9   11   16                                                  
CONECT   11   10   12   15                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12    9                                                       
CONECT   14   12                                                            
CONECT   15   11                                                            
CONECT   16   10   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18    2   20   21                                             
CONECT   20   19    4                                                       
CONECT   21   19                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₆O₆

Average Mass

292.2870 Da

Monoisotopic Mass

292.09469 Da

IUPAC Name

(2Z,4R,8R,9S,11R)-9-hydroxy-2-(hydroxymethyl)-11-methyl-7-methylidene-5,14-dioxatricyclo[9.2.1.0^{4,8}]tetradeca-1(13),2-diene-6,12-dione

Traditional Name

(2Z,4R,8R,9S,11R)-9-hydroxy-2-(hydroxymethyl)-11-methyl-7-methylidene-5,14-dioxatricyclo[9.2.1.0^{4,8}]tetradeca-1(13),2-diene-6,12-dione

CAS Registry Number

Not Available

SMILES

C[C@]12C[C@H](O)[C@@H]3[C@H](OC(=O)C3=C)\C=C(CO)/C(O1)=CC2=O

InChI Identifier

InChI=1S/C15H16O6/c1-7-13-9(17)5-15(2)12(18)4-10(21-15)8(6-16)3-11(13)20-14(7)19/h3-4,9,11,13,16-17H,1,5-6H2,2H3/b8-3-/t9-,11+,13+,15+/m0/s1

InChI Key

MWWAXCUUOZKNLZ-WKSQIXHXSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C2D6OS, experimental)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD3OD, experimental)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CD3OD, experimental)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD₃OD, experimental)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 600, CD₃OD, simulated)	quan.khong@nih.gov	National Cancer Institute at Frederick	Quan T. Khong	2025-03-01	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Centratherum punctatum		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.42	ChemAxon
pKa (Strongest Acidic)	14.5	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	93.06 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	74.17 m³·mol⁻¹	ChemAxon
Polarizability	28.47 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Centratherolide-G (NP0350775)

MOL for NP0350775 (Centratherolide-G)

3D MOL for NP0350775 (Centratherolide-G)

3D SDF for NP0350775 (Centratherolide-G)

3D-SDF for NP0350775 (Centratherolide-G)

PDB for NP0350775 (Centratherolide-G)

3D PDB for NP0350775 (Centratherolide-G)

SMILES for NP0350775 (Centratherolide-G)

INCHI for NP0350775 (Centratherolide-G)

Structure for NP0350775 (Centratherolide-G)

3D Structure for NP0350775 (Centratherolide-G)