NP-MRD: Showing NP-Card for Bipoladisin D (NP0350751)

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Record Information

Version

2.0

Created at

2025-02-25 21:18:09 UTC

Updated at

2025-03-21 01:03:14 UTC

NP-MRD ID

NP0350751

Natural Product DOI

https://doi.org/10.57994/3735

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Bipoladisin D

Description

Based on a literature review very few articles have been published on Bipoladisin D.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05252321252D          

 29 33  0  0  1  0            999 V2000
    0.3038   -2.0262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5993   -1.2559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2246   -1.2130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4384   -0.4161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2087   -0.1207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8947   -0.4856    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2534    0.0334    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3879    0.5524    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5488    0.8037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3727    0.7608    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1589    1.5576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5864   -0.0361    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2278   -0.5551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9323   -1.3253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1085   -1.2824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5895   -1.9237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8853   -2.6938    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4103   -0.0790    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2342   -0.1219    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4480   -0.9187    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2183   -1.2142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8593   -0.6948    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6296   -0.9902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7300    0.1200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7562   -1.3683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1149   -0.8493    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3181   -1.0630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7058    0.6913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0644    1.2103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  2  1  1  0  0  0
  6  7  1  0  0  0  0
  7  4  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
 10  9  1  0  0  0  0
 10 11  1  6  0  0  0
 12 10  1  0  0  0  0
 12  6  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
  6 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  1  0  0  0
 20 19  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 20 25  1  0  0  0  0
 26 25  1  0  0  0  0
 18 26  1  0  0  0  0
 26 27  1  6  0  0  0
 18 28  1  0  0  0  0
 28 29  1  0  0  0  0
 10 29  1  0  0  0  0
M  END


  Mrv2104 05252321252D          

 29 33  0  0  1  0            999 V2000
    0.3038   -2.0262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5993   -1.2559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2246   -1.2130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4384   -0.4161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2087   -0.1207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8947   -0.4856    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2534    0.0334    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3879    0.5524    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5488    0.8037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3727    0.7608    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1589    1.5576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5864   -0.0361    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.2278   -0.5551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9323   -1.3253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1085   -1.2824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5895   -1.9237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8853   -2.6938    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4103   -0.0790    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2342   -0.1219    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4480   -0.9187    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2183   -1.2142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8593   -0.6948    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6296   -0.9902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7300    0.1200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7562   -1.3683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1149   -0.8493    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3181   -1.0630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7058    0.6913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0644    1.2103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  6  2  1  1  0  0  0
  6  7  1  0  0  0  0
  7  4  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
 10  9  1  0  0  0  0
 10 11  1  6  0  0  0
 12 10  1  0  0  0  0
 12  6  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
  6 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  1  0  0  0
 20 19  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 20 25  1  0  0  0  0
 26 25  1  0  0  0  0
 18 26  1  0  0  0  0
 26 27  1  6  0  0  0
 18 28  1  0  0  0  0
 28 29  1  0  0  0  0
 10 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0350751

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]12C[C@@]3(C)CC[C@@]4(O[C@@H](C[C@@H]4C)C=C(C)C)[C@]33CC=C(CO)[C@]13C(=O)C=C2C

> <INCHI_IDENTIFIER>
InChI=1S/C25H34O3/c1-15(2)10-19-12-17(4)23(28-19)9-8-22(5)13-20-16(3)11-21(27)25(20)18(14-26)6-7-24(22,23)25/h6,10-11,17,19-20,26H,7-9,12-14H2,1-5H3/t17-,19+,20+,22+,23-,24-,25+/m0/s1

> <INCHI_KEY>
QFNKAULXWHZMTR-ZJYVPGJFSA-N

> <FORMULA>
C25H34O3

> <MOLECULAR_WEIGHT>
382.544

> <EXACT_MASS>
382.250794955

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
43.9158156968027

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1'R,2S,3S,5S,5'R,9'R,11'R)-2'-(hydroxymethyl)-3,9',12'-trimethyl-5-(2-methylprop-1-en-1-yl)spiro[oxolane-2,6'-tetracyclo[9.3.0.0^{1,5}.0^{5,9}]tetradecane]-2',12'-dien-14'-one

> <JCHEM_LOGP>
3.9160268186666642

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.545375583952197

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.126707045257389

> <JCHEM_PKA_STRONGEST_BASIC>
-2.742463227217252

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
113.22019999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,2S,3S,5S,5'R,9'R,11'R)-2'-(hydroxymethyl)-3,9',12'-trimethyl-5-(2-methylprop-1-en-1-yl)spiro[oxolane-2,6'-tetracyclo[9.3.0.0^{1,5}.0^{5,9}]tetradecane]-2',12'-dien-14'-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-MAY-23         0                                  
HETATM    1  O   UNK     0       0.567  -3.782   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.119  -2.344   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.419  -2.264   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.818  -0.777   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.256  -0.225   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.670  -0.906   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.473   0.062   0.000  0.00  0.00           C+0
HETATM    8  H   UNK     0      -0.724   1.031   0.000  0.00  0.00           H+0
HETATM    9  C   UNK     0       1.024   1.500   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.562   1.420   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.163   2.907   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.961  -0.067   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.158  -1.036   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.607  -2.474   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.069  -2.394   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.100  -3.591   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.653  -5.028   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.499  -0.147   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.037  -0.228   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.436  -1.715   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.874  -2.266   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.071  -1.297   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.509  -1.848   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.829   0.224   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.145  -2.554   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.948  -1.585   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.460  -1.984   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.051   1.290   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.854   2.259   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    7                                                  
CONECT    5    4                                                            
CONECT    6    2    7   12   15                                             
CONECT    7    6    4    8    9                                             
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12   29                                             
CONECT   11   10                                                            
CONECT   12   10    6   13   18                                             
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14    6   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   12   19   26   28                                             
CONECT   19   18   20                                                       
CONECT   20   19   21   25                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   20   26                                                       
CONECT   26   25   18   27                                                  
CONECT   27   26                                                            
CONECT   28   18   29                                                       
CONECT   29   28   10                                                       
MASTER        0    0    0    0    0    0    0    0   29    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₄O₃

Average Mass

382.5440 Da

Monoisotopic Mass

382.25079 Da

IUPAC Name

(1'R,2S,3S,5S,5'R,9'R,11'R)-2'-(hydroxymethyl)-3,9',12'-trimethyl-5-(2-methylprop-1-en-1-yl)spiro[oxolane-2,6'-tetracyclo[9.3.0.0^{1,5}.0^{5,9}]tetradecane]-2',12'-dien-14'-one

Traditional Name

(1'R,2S,3S,5S,5'R,9'R,11'R)-2'-(hydroxymethyl)-3,9',12'-trimethyl-5-(2-methylprop-1-en-1-yl)spiro[oxolane-2,6'-tetracyclo[9.3.0.0^{1,5}.0^{5,9}]tetradecane]-2',12'-dien-14'-one

CAS Registry Number

Not Available

SMILES

[H][C@]12C[C@@]3(C)CC[C@@]4(O[C@@H](C[C@@H]4C)C=C(C)C)[C@]33CC=C(CO)[C@]13C(=O)C=C2C

InChI Identifier

InChI=1S/C25H34O3/c1-15(2)10-19-12-17(4)23(28-19)9-8-22(5)13-20-16(3)11-21(27)25(20)18(14-26)6-7-24(22,23)25/h6,10-11,17,19-20,26H,7-9,12-14H2,1-5H3/t17-,19+,20+,22+,23-,24-,25+/m0/s1

InChI Key

QFNKAULXWHZMTR-ZJYVPGJFSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400.132470967 MHz, CDCl₃, experimental)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 400.132470967, CDCl₃, simulated)	15023682370@163.com	Huazhong university of science and technology	Yong Shen	2025-02-25	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Bipolaris maydis		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.92	ChemAxon
pKa (Strongest Acidic)	15.13	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	113.22 m³·mol⁻¹	ChemAxon
Polarizability	43.92 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Bipoladisin D (NP0350751)

MOL for NP0350751 (Bipoladisin D)

3D MOL for NP0350751 (Bipoladisin D)

3D SDF for NP0350751 (Bipoladisin D)

3D-SDF for NP0350751 (Bipoladisin D)

PDB for NP0350751 (Bipoladisin D)

3D PDB for NP0350751 (Bipoladisin D)

SMILES for NP0350751 (Bipoladisin D)

INCHI for NP0350751 (Bipoladisin D)

Structure for NP0350751 (Bipoladisin D)

3D Structure for NP0350751 (Bipoladisin D)