NP-MRD: Showing NP-Card for (2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol (NP0350679)

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Record Information

Version

2.0

Created at

2025-01-28 07:03:58 UTC

Updated at

2026-02-27 22:52:56 UTC

NP-MRD ID

NP0350679

Natural Product DOI

https://doi.org/10.57994/3658

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol

Description

(2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol was first documented in 2025 (PMID: 40126595). Based on a literature review very few articles have been published on (2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 04272307122D          

 16 15  0  0  1  0            999 V2000
    2.0625   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125   -0.7145    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    0.7145    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.0625    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.7145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1270   -0.3020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8250   -1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4125   -2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6500   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0625   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 10 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0350679

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H](O)[C@@](C)(O)\C=C\C=C/[C@H](O)C(Cl)Cl

> <INCHI_IDENTIFIER>
InChI=1S/C11H18Cl2O3/c1-3-9(15)11(2,16)7-5-4-6-8(14)10(12)13/h4-10,14-16H,3H2,1-2H3/b6-4-,7-5+/t8-,9+,11-/m0/s1

> <INCHI_KEY>
YEMGGUUJSCFTAG-TXNGQTMDSA-N

> <FORMULA>
C11H18Cl2O3

> <MOLECULAR_WEIGHT>
269.16

> <EXACT_MASS>
268.0632998

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
26.886248341134298

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol

> <JCHEM_LOGP>
1.8280485889999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.597450782752436

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.825502391363289

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2520847149126344

> <JCHEM_POLAR_SURFACE_AREA>
60.69

> <JCHEM_REFRACTIVITY>
68.8019

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-APR-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-23         0                                  
HETATM    1  O   UNK     0       3.850  -1.334   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       4.620   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.160   0.000   0.000  0.00  0.00           C+0
HETATM    4 Cl   UNK     0       6.930  -1.334   0.000  0.00  0.00          Cl+0
HETATM    5 Cl   UNK     0       6.930   1.334   0.000  0.00  0.00          Cl+0
HETATM    6  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -2.104  -0.564   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.564  -2.104   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.540  -2.667   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.770  -4.001   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -3.080  -2.667   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -3.850  -4.001   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    2    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   13                                             
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13   10   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   30    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₁₈Cl₂O₃

Average Mass

269.1600 Da

Monoisotopic Mass

268.06330 Da

IUPAC Name

(2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol

Traditional Name

(2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol

CAS Registry Number

Not Available

SMILES

CC[C@@H](O)[C@@](C)(O)\C=C\C=C/[C@H](O)C(Cl)Cl

InChI Identifier

InChI=1S/C11H18Cl2O3/c1-3-9(15)11(2,16)7-5-4-6-8(14)10(12)13/h4-10,14-16H,3H2,1-2H3/b6-4-,7-5+/t8-,9+,11-/m0/s1

InChI Key

YEMGGUUJSCFTAG-TXNGQTMDSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	[email protected]	Shanghai Jiao Tong University	Doudou_Dong	2025-01-28	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	[email protected]	Shanghai Jiao Tong University	Doudou_Dong	2025-01-28	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	[email protected]	Shanghai Jiao Tong University	Doudou_Dong	2025-01-28	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	[email protected]	Shanghai Jiao Tong University	Doudou_Dong	2025-01-28	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	[email protected]	Shanghai Jiao Tong University	Doudou_Dong	2025-01-28	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	[email protected]	Shanghai Jiao Tong University	Doudou_Dong	2025-01-28	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	[email protected]	Shanghai Jiao Tong University	Doudou_Dong	2025-01-28	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 600.0, Chloroform-d, simulated)	[email protected]	Not Available	Not Available	2026-02-27	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 150.0, Chloroform-d, simulated)	[email protected]	Not Available	Not Available	2026-02-27	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp. agglomeratus 5-2-6		Not Available
Streptomyces sp. agglomeratus 5-2-6		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.83	ChemAxon
pKa (Strongest Acidic)	12.83	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	60.69 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	68.8 m³·mol⁻¹	ChemAxon
Polarizability	26.89 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol (NP0350679)

MOL for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

3D MOL for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

3D SDF for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

3D-SDF for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

PDB for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

3D PDB for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

SMILES for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

INCHI for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

Structure for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)

3D Structure for NP0350679 ((2S,3Z,5E,7S,8R)-1,1-dichloro-7-methyldeca-3,5-diene-2,7,8-triol)