NP-MRD: Showing NP-Card for Panusimilin D (NP0350568)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2024-12-24 06:56:50 UTC

Updated at

2024-12-26 00:02:56 UTC

NP-MRD ID

NP0350568

Natural Product DOI

https://doi.org/10.57994/3544

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Panusimilin D

Description

Based on a literature review very few articles have been published on Panusimilin D.

Structure

MOL SDF PDB SMILES InChI

  Mrv2104 03232307062D          

 28 32  0  0  1  0            999 V2000
    3.8905   -4.9017    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0887   -4.1008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4942   -3.5288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7016   -3.7576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6923   -2.7280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4850   -2.4992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6831   -1.6983    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4758   -1.4695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1128   -0.7286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1424   -0.9834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0703   -2.0415    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8721   -2.8424    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4666   -3.4144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2592   -3.1856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4574   -2.3847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2500   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8445   -2.7280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6371   -2.4992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2316   -3.0712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0334   -3.8720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8565   -3.9281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1211   -4.6924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2408   -4.1008    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6463   -3.5288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8537   -3.7576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8629   -1.8127    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0795   -3.0712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8813   -3.8720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 11  8  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 20 23  1  0  0  0  0
 17 24  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 14 25  1  0  0  0  0
 15 26  1  0  0  0  0
 11 26  1  6  0  0  0
  6 27  1  0  0  0  0
 12 27  1  0  0  0  0
 27 28  2  0  0  0  0
  2 28  1  0  0  0  0
M  END

  Mrv2104 03232307062D          

 28 32  0  0  1  0            999 V2000
    3.8905   -4.9017    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0887   -4.1008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4942   -3.5288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7016   -3.7576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6923   -2.7280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4850   -2.4992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6831   -1.6983    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4758   -1.4695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1128   -0.7286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1424   -0.9834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0703   -2.0415    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8721   -2.8424    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4666   -3.4144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.2592   -3.1856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4574   -2.3847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2500   -2.1559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8445   -2.7280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6371   -2.4992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2316   -3.0712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0334   -3.8720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8565   -3.9281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.1211   -4.6924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2408   -4.1008    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6463   -3.5288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8537   -3.7576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8629   -1.8127    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0795   -3.0712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8813   -3.8720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 11  8  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 20 23  1  0  0  0  0
 17 24  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 14 25  1  0  0  0  0
 15 26  1  0  0  0  0
 11 26  1  6  0  0  0
  6 27  1  0  0  0  0
 12 27  1  0  0  0  0
 27 28  2  0  0  0  0
  2 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0350568

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)OC2=CC3=C(O[C@@H]4[C@H](O3)C3=CC(O)=C(O)C=C3OC4(C)C)C=C2C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C22H22O6/c1-21(2)6-5-11-7-17-18(10-15(11)27-21)25-19-12-8-13(23)14(24)9-16(12)28-22(3,4)20(19)26-17/h5-10,19-20,23-24H,1-4H3/t19-,20-/m1/s1

> <INCHI_KEY>
MOHUDYKMRPUPFQ-WOJBJXKFSA-N

> <FORMULA>
C22H22O6

> <MOLECULAR_WEIGHT>
382.412

> <EXACT_MASS>
382.141638428

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
41.11468193738751

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,12R)-11,11,19,19-tetramethyl-2,10,13,20-tetraoxapentacyclo[12.8.0.0^{3,12}.0^{4,9}.0^{16,21}]docosa-1(14),4,6,8,15,17,21-heptaene-6,7-diol

> <JCHEM_LOGP>
3.9918338413333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.772293545445796

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.308968282956323

> <JCHEM_PKA_STRONGEST_BASIC>
-4.325684832572929

> <JCHEM_POLAR_SURFACE_AREA>
77.38000000000001

> <JCHEM_REFRACTIVITY>
102.87480000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3R,12R)-11,11,19,19-tetramethyl-2,10,13,20-tetraoxapentacyclo[12.8.0.0^{3,12}.0^{4,9}.0^{16,21}]docosa-1(14),4,6,8,15,17,21-heptaene-6,7-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-MAR-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-MAR-23         0                                  
HETATM    1  O   UNK     0       7.262  -9.150   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       7.632  -7.655   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.522  -6.587   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.043  -7.014   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.892  -5.092   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.372  -4.665   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       8.742  -3.170   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      10.221  -2.743   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.544  -1.360   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.466  -1.836   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.331  -3.811   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.961  -5.306   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      12.071  -6.374   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      13.551  -5.946   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.920  -4.452   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      15.400  -4.024   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      16.510  -5.092   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      17.989  -4.665   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      19.099  -5.733   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      18.729  -7.228   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      20.265  -7.332   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      18.893  -8.759   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      17.249  -7.655   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      16.140  -6.587   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      14.660  -7.014   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      12.811  -3.384   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       9.482  -5.733   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       9.112  -7.228   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   28                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   27                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8   12   26                                                  
CONECT   12   11   13   27                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   25                                                  
CONECT   15   14   16   26                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   24                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22   23                                             
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   20   24                                                       
CONECT   24   17   23   25                                                  
CONECT   25   24   14                                                       
CONECT   26   15   11                                                       
CONECT   27    6   12   28                                                  
CONECT   28   27    2                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₂₂O₆

Average Mass

382.4120 Da

Monoisotopic Mass

382.14164 Da

IUPAC Name

(3R,12R)-11,11,19,19-tetramethyl-2,10,13,20-tetraoxapentacyclo[12.8.0.0^{3,12}.0^{4,9}.0^{16,21}]docosa-1(14),4,6,8,15,17,21-heptaene-6,7-diol

Traditional Name

(3R,12R)-11,11,19,19-tetramethyl-2,10,13,20-tetraoxapentacyclo[12.8.0.0^{3,12}.0^{4,9}.0^{16,21}]docosa-1(14),4,6,8,15,17,21-heptaene-6,7-diol

CAS Registry Number

Not Available

SMILES

CC1(C)OC2=CC3=C(O[C@@H]4[C@H](O3)C3=CC(O)=C(O)C=C3OC4(C)C)C=C2C=C1

InChI Identifier

InChI=1S/C22H22O6/c1-21(2)6-5-11-7-17-18(10-15(11)27-21)25-19-12-8-13(23)14(24)9-16(12)28-22(3,4)20(19)26-17/h5-10,19-20,23-24H,1-4H3/t19-,20-/m1/s1

InChI Key

MOHUDYKMRPUPFQ-WOJBJXKFSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, C3D6O, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
HMQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, C3D6O, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, C3D6O, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, C3D6O, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, C3D6O, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, C3D6O, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, C3D6O, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
similis		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.99	ChemAxon
pKa (Strongest Acidic)	9.31	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	77.38 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	102.87 m³·mol⁻¹	ChemAxon
Polarizability	41.11 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Panusimilin D (NP0350568)

MOL for NP0350568 (Panusimilin D)

3D MOL for NP0350568 (Panusimilin D)

3D SDF for NP0350568 (Panusimilin D)

3D-SDF for NP0350568 (Panusimilin D)

PDB for NP0350568 (Panusimilin D)

3D PDB for NP0350568 (Panusimilin D)

SMILES for NP0350568 (Panusimilin D)

INCHI for NP0350568 (Panusimilin D)

Structure for NP0350568 (Panusimilin D)

3D Structure for NP0350568 (Panusimilin D)