NP-MRD: Showing NP-Card for Panusimilin A (NP0350565)

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Record Information

Version

2.0

Created at

2024-12-24 06:45:14 UTC

Updated at

2024-12-26 00:02:49 UTC

NP-MRD ID

NP0350565

Natural Product DOI

https://doi.org/10.57994/3541

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Panusimilin A

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 03232306542D          

 35 39  0  0  1  0            999 V2000
   -5.2389   -0.6544    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4319   -0.8259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1770   -1.6106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3700   -1.7821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8180   -1.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0729   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8799   -0.2129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1349    0.5718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9418    0.7433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0110   -1.3405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5631   -1.9536    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3436   -0.8556    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6762   -1.3405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1241   -1.9536    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9311   -2.1251    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3791   -2.7382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0787   -3.1754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0700   -3.5032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4279   -2.5667    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6828   -1.7821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1308   -1.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3858   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1927   -0.2129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4477    0.5718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8956    1.1849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7448   -0.8259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5517   -0.6544    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4898   -1.6106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2667   -2.8788    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7561   -2.1251    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2712   -1.4577    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3081   -2.7382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6085   -3.1754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6172   -3.5032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1151   -2.5667    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  2  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  5  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 13 12  1  0  0  0  0
 13 14  1  6  0  0  0
 15 13  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 13 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 23 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  2  0  0  0  0
 20 28  1  0  0  0  0
 15 29  1  6  0  0  0
 15 30  1  0  0  0  0
 30 10  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 32 35  1  0  0  0  0
  4 35  1  0  0  0  0
M  END


  Mrv2104 03232306542D          

 35 39  0  0  1  0            999 V2000
   -5.2389   -0.6544    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4319   -0.8259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1770   -1.6106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3700   -1.7821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8180   -1.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0729   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8799   -0.2129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1349    0.5718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9418    0.7433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0110   -1.3405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5631   -1.9536    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3436   -0.8556    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6762   -1.3405    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1241   -1.9536    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9311   -2.1251    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3791   -2.7382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0787   -3.1754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0700   -3.5032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4279   -2.5667    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6828   -1.7821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1308   -1.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3858   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1927   -0.2129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4477    0.5718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8956    1.1849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7448   -0.8259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5517   -0.6544    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4898   -1.6106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2667   -2.8788    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7561   -2.1251    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2712   -1.4577    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3081   -2.7382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6085   -3.1754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6172   -3.5032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1151   -2.5667    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  2  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  5  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 13 12  1  0  0  0  0
 13 14  1  6  0  0  0
 15 13  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 13 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 23 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  2  0  0  0  0
 20 28  1  0  0  0  0
 15 29  1  6  0  0  0
 15 30  1  0  0  0  0
 30 10  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 32 35  1  0  0  0  0
  4 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0350565

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@@]12O[C@@]3([H])C4=C(OC(C)(C)[C@@]3([H])[C@]1([H])C(C)(C)OC1=C2C=C(OC)C(O)=C1)C=C(O)C(OC)=C4

> <INCHI_IDENTIFIER>
InChI=1S/C24H28O7/c1-23(2)19-20-22(12-8-18(28-6)14(26)10-16(12)31-24(20,3)4)29-21(19)11-7-17(27-5)13(25)9-15(11)30-23/h7-10,19-22,25-26H,1-6H3/t19-,20-,21-,22-/m0/s1

> <INCHI_KEY>
DZSUUIPCQUBBAA-CMOCDZPBSA-N

> <FORMULA>
C24H28O7

> <MOLECULAR_WEIGHT>
428.481

> <EXACT_MASS>
428.183503242

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
45.99044670191144

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2S,11R,13R)-8,16-dimethoxy-3,3,21,21-tetramethyl-4,12,20-trioxapentacyclo[11.8.0.0^{2,11}.0^{5,10}.0^{14,19}]henicosa-5(10),6,8,14(19),15,17-hexaene-7,17-diol

> <JCHEM_LOGP>
3.2321709669999996

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.104734742679895

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.502674751351742

> <JCHEM_PKA_STRONGEST_BASIC>
-3.9576749909974698

> <JCHEM_POLAR_SURFACE_AREA>
86.61000000000001

> <JCHEM_REFRACTIVITY>
113.12809999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,11R,13R)-8,16-dimethoxy-3,3,21,21-tetramethyl-4,12,20-trioxapentacyclo[11.8.0.0^{2,11}.0^{5,10}.0^{14,19}]henicosa-5(10),6,8,14(19),15,17-hexaene-7,17-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-MAR-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-MAR-23         0                                  
HETATM    1  O   UNK     0      -9.779  -1.222   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -8.273  -1.542   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -7.797  -3.006   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.291  -3.327   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.260  -2.182   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.736  -0.718   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -7.243  -0.397   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -7.718   1.067   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -9.225   1.387   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.754  -2.502   0.000  0.00  0.00           C+0
HETATM   11  H   UNK     0      -4.784  -3.647   0.000  0.00  0.00           H+0
HETATM   12  O   UNK     0      -2.508  -1.597   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.262  -2.502   0.000  0.00  0.00           C+0
HETATM   14  H   UNK     0      -0.232  -3.647   0.000  0.00  0.00           H+0
HETATM   15  C   UNK     0      -1.738  -3.967   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.708  -5.111   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.014  -5.927   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.131  -6.539   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.799  -4.791   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       1.275  -3.327   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.244  -2.182   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.720  -0.718   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.226  -0.397   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.702   1.067   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       1.672   2.212   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.257  -1.542   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.763  -1.222   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.781  -3.006   0.000  0.00  0.00           C+0
HETATM   29  H   UNK     0      -2.364  -5.374   0.000  0.00  0.00           H+0
HETATM   30  C   UNK     0      -3.278  -3.967   0.000  0.00  0.00           C+0
HETATM   31  H   UNK     0      -2.373  -2.721   0.000  0.00  0.00           H+0
HETATM   32  C   UNK     0      -4.309  -5.111   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -3.003  -5.927   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -4.885  -6.539   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -5.815  -4.791   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   35                                                  
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    5   11   12   30                                             
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   15   21                                             
CONECT   14   13                                                            
CONECT   15   13   16   29   30                                             
CONECT   16   15   17   18   19                                             
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   16   20                                                       
CONECT   20   19   21   28                                                  
CONECT   21   20   13   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   26                                                  
CONECT   24   23   25                                                       
CONECT   25   24                                                            
CONECT   26   23   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   20                                                       
CONECT   29   15                                                            
CONECT   30   15   10   31   32                                             
CONECT   31   30                                                            
CONECT   32   30   33   34   35                                             
CONECT   33   32                                                            
CONECT   34   32                                                            
CONECT   35   32    4                                                       
MASTER        0    0    0    0    0    0    0    0   35    0   78    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₂₈O₇

Average Mass

428.4810 Da

Monoisotopic Mass

428.18350 Da

IUPAC Name

(1S,2S,11R,13R)-8,16-dimethoxy-3,3,21,21-tetramethyl-4,12,20-trioxapentacyclo[11.8.0.0^{2,11}.0^{5,10}.0^{14,19}]henicosa-5(10),6,8,14(19),15,17-hexaene-7,17-diol

Traditional Name

(1S,2S,11R,13R)-8,16-dimethoxy-3,3,21,21-tetramethyl-4,12,20-trioxapentacyclo[11.8.0.0^{2,11}.0^{5,10}.0^{14,19}]henicosa-5(10),6,8,14(19),15,17-hexaene-7,17-diol

CAS Registry Number

Not Available

SMILES

[H][C@@]12O[C@@]3([H])C4=C(OC(C)(C)[C@@]3([H])[C@]1([H])C(C)(C)OC1=C2C=C(OC)C(O)=C1)C=C(O)C(OC)=C4

InChI Identifier

InChI=1S/C24H28O7/c1-23(2)19-20-22(12-8-18(28-6)14(26)10-16(12)31-24(20,3)4)29-21(19)11-7-17(27-5)13(25)9-15(11)30-23/h7-10,19-22,25-26H,1-6H3/t19-,20-,21-,22-/m0/s1

InChI Key

DZSUUIPCQUBBAA-CMOCDZPBSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
HMQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	isaka@biotec.or.th	BIOTEC, Thailand	Masahiko Isaka	2024-12-24	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Panus similis		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.23	ChemAxon
pKa (Strongest Acidic)	9.5	ChemAxon
pKa (Strongest Basic)	-4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	86.61 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	113.13 m³·mol⁻¹	ChemAxon
Polarizability	45.99 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Panusimilin A (NP0350565)

MOL for NP0350565 (Panusimilin A)

3D MOL for NP0350565 (Panusimilin A)

3D SDF for NP0350565 (Panusimilin A)

3D-SDF for NP0350565 (Panusimilin A)

PDB for NP0350565 (Panusimilin A)

3D PDB for NP0350565 (Panusimilin A)

SMILES for NP0350565 (Panusimilin A)

INCHI for NP0350565 (Panusimilin A)

Structure for NP0350565 (Panusimilin A)

3D Structure for NP0350565 (Panusimilin A)