NP-MRD: Showing NP-Card for verticilla-3,7,11(12)- triene (NP0342005)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2024-12-01 19:01:40 UTC

Updated at

2025-02-11 21:35:14 UTC

NP-MRD ID

NP0342005

Natural Product DOI

https://doi.org/10.57994/3498

Secondary Accession Numbers

None

Natural Product Identification

Common Name

verticilla-3,7,11(12)- triene

Description

(1S,3E,7E)-4,8,12,15,15-pentamethylbicyclo[9.3.1]Pentadeca-3,7,11-triene belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. Based on a literature review very few articles have been published on (1S,3E,7E)-4,8,12,15,15-pentamethylbicyclo[9.3.1]Pentadeca-3,7,11-triene.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304272223562D          

 20 21  0  0  1  0            999 V2000
   -0.8250   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -1.5395    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8250   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4125   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9390    0.5686    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6500    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8875   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8875   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0625   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6500   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7028   -0.6985    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4141   -0.8381    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2771   -1.6866    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4644   -0.0435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
  3 16  1  0  0  0  0
 14 17  1  0  0  0  0
 10 18  1  0  0  0  0
  4 19  1  0  0  0  0
  4 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0342005

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C2CC\C(C)=C\CC\C(C)=C\C[C@H](CC1)C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C20H32/c1-15-7-6-8-16(2)10-14-19-17(3)11-13-18(12-9-15)20(19,4)5/h8-9,18H,6-7,10-14H2,1-5H3/b15-9+,16-8+/t18-/m1/s1

> <INCHI_KEY>
PPHTWNLAMYYUHE-DEMSDSCJSA-N

> <FORMULA>
C20H32

> <MOLECULAR_WEIGHT>
272.476

> <EXACT_MASS>
272.25040103

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
34.081643820853785

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,3E,7E)-4,8,12,15,15-pentamethylbicyclo[9.3.1]pentadeca-3,7,11-triene

> <ALOGPS_LOGP>
7.29

> <JCHEM_LOGP>
6.077432171666667

> <ALOGPS_LOGS>
-4.79

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
92.06089999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.46e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3E,7E)-4,8,12,15,15-pentamethylbicyclo[9.3.1]pentadeca-3,7,11-triene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 27-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-APR-22         0                                  
HETATM    1  C   UNK     0      -1.540  -1.540   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.770  -2.874   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.770  -2.874   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.540  -1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.770  -0.206   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.770  -0.206   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.753   1.061   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.540   1.127   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.080   1.127   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.850  -0.206   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.390  -0.206   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.160  -1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.390  -2.874   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.850  -2.874   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.080  -4.207   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.540  -4.207   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.179  -1.304   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.506  -1.564   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.384  -3.148   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.734  -0.081   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   16                                                  
CONECT    4    3    5   19   20                                             
CONECT    5    4    6    8                                                  
CONECT    6    5    1    7                                                  
CONECT    7    6                                                            
CONECT    8    5    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   18                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15    3                                                       
CONECT   17   14                                                            
CONECT   18   10                                                            
CONECT   19    4                                                            
CONECT   20    4                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂

Average Mass

272.4760 Da

Monoisotopic Mass

272.25040 Da

IUPAC Name

(1S,3E,7E)-4,8,12,15,15-pentamethylbicyclo[9.3.1]pentadeca-3,7,11-triene

Traditional Name

(1S,3E,7E)-4,8,12,15,15-pentamethylbicyclo[9.3.1]pentadeca-3,7,11-triene

CAS Registry Number

Not Available

SMILES

CC1=C2CC\C(C)=C\CC\C(C)=C\C[C@H](CC1)C2(C)C

InChI Identifier

InChI=1S/C20H32/c1-15-7-6-8-16(2)10-14-19-17(3)11-13-18(12-9-15)20(19,4)5/h8-9,18H,6-7,10-14H2,1-5H3/b15-9+,16-8+/t18-/m1/s1

InChI Key

PPHTWNLAMYYUHE-DEMSDSCJSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C6D6, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-01	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C6D6, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-01	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C6D6, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-01	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 151 MHz, C6D6, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-01	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C6D6, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-01	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C6D6, experimental)	ning.wenbo@ufl.edu	Not Available	Not Available	2024-12-01	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chitinophaga niabensis		Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Verticillane diterpenoid
Diterpenoid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.29	ALOGPS
logP	6.08	ChemAxon
logS	-4.8	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	92.06 m³·mol⁻¹	ChemAxon
Polarizability	34.08 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

135082972

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for verticilla-3,7,11(12)- triene (NP0342005)

MOL for NP0342005 (verticilla-3,7,11(12)- triene)

3D MOL for NP0342005 (verticilla-3,7,11(12)- triene)

3D SDF for NP0342005 (verticilla-3,7,11(12)- triene)

3D-SDF for NP0342005 (verticilla-3,7,11(12)- triene)

PDB for NP0342005 (verticilla-3,7,11(12)- triene)

3D PDB for NP0342005 (verticilla-3,7,11(12)- triene)

SMILES for NP0342005 (verticilla-3,7,11(12)- triene)

INCHI for NP0342005 (verticilla-3,7,11(12)- triene)

Structure for NP0342005 (verticilla-3,7,11(12)- triene)

3D Structure for NP0342005 (verticilla-3,7,11(12)- triene)