NP-MRD: Showing NP-Card for (9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate (NP0339777)

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Record Information

Version

2.0

Created at

2024-09-11 23:30:22 UTC

Updated at

2024-09-11 23:30:22 UTC

NP-MRD ID

NP0339777

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate

Description

Based on a literature review very few articles have been published on (9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05272302022D          

 21 21  0  0  0  0            999 V2000
   -5.8263    0.8546    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8263    0.0296    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1118   -0.3829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1118   -1.2079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3974   -1.6204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3974   -2.4454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9849   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8099   -3.1599    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2704   -3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5559   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8414   -3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1270   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4125   -3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0164   -3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7309   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1599   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8743   -3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5888   -3.1599    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.8743   -4.3974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  6  8  1  0  0  0  0
  7  9  2  0  0  0  0
  9 10  1  4  0  0  0
 10 11  2  0  0  0  0
 11 12  1  4  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
M  CHG  1  20  -1
M  END
> <DATABASE_ID>
NP0339777

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC1OC1=CC=CCCCCCCCC([O-])=O

> <INCHI_IDENTIFIER>
InChI=1/C18H30O3/c1-2-3-10-13-16-17(21-16)14-11-8-6-4-5-7-9-12-15-18(19)20/h8,11,14,16H,2-7,9-10,12-13,15H2,1H3,(H,19,20)/p-1

> <INCHI_KEY>
ZFVKKBAQVWQQHP-UHFFFAOYNA-M

> <FORMULA>
C18H29O3

> <MOLECULAR_WEIGHT>
293.428

> <EXACT_MASS>
293.212218374

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
36.76272066466016

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
11-(3-pentyloxiran-2-ylidene)undec-9-enoate

> <JCHEM_LOGP>
5.151623286333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.98816728396367

> <JCHEM_PKA_STRONGEST_BASIC>
-4.872455108900421

> <JCHEM_POLAR_SURFACE_AREA>
52.66

> <JCHEM_REFRACTIVITY>
99.2536

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
11-(3-pentyloxiran-2-ylidene)undec-9-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-23         0                                  
HETATM    1  C   UNK     0     -10.876   1.595   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -10.876   0.055   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -9.542  -0.715   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -9.542  -2.255   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -8.208  -3.025   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -8.208  -4.565   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -7.438  -5.898   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -8.978  -5.898   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -6.105  -6.668   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.771  -5.898   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.437  -6.668   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.104  -5.898   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.770  -6.668   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.564  -5.898   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.897  -6.668   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.231  -5.898   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.565  -6.668   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.898  -5.898   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.232  -6.668   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       8.566  -5.898   0.000  0.00  0.00           O-1
HETATM   21  O   UNK     0       7.232  -8.208   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    6                                                       
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   42    0
END

View in JSmol

Synonyms

Value	Source
(9Z)-(13S)-12,13-Epoxyoctadeca-9,11-dienoic acid	Generator

Chemical Formula

C₁₈H₂₉O₃

Average Mass

293.4280 Da

Monoisotopic Mass

293.21222 Da

IUPAC Name

11-(3-pentyloxiran-2-ylidene)undec-9-enoate

Traditional Name

11-(3-pentyloxiran-2-ylidene)undec-9-enoate

CAS Registry Number

Not Available

SMILES

CCCCCC1OC1=CC=CCCCCCCCC([O-])=O

InChI Identifier

InChI=1/C18H30O3/c1-2-3-10-13-16-17(21-16)14-11-8-6-4-5-7-9-12-15-18(19)20/h8,11,14,16H,2-7,9-10,12-13,15H2,1H3,(H,19,20)/p-1

InChI Key

ZFVKKBAQVWQQHP-UHFFFAOYNA-M

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.15	ChemAxon
pKa (Strongest Acidic)	4.99	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	52.66 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	99.25 m³·mol⁻¹	ChemAxon
Polarizability	36.76 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for (9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate (NP0339777)

MOL for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

3D MOL for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

3D SDF for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

3D-SDF for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

PDB for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

3D PDB for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

SMILES for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

INCHI for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

Structure for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)

3D Structure for NP0339777 ((9Z)-(13S)-12,13-epoxyoctadeca-9,11-dienoate)