NP-MRD: Showing NP-Card for 5-methylsulfinylpentyl glucosinolate (NP0339590)

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Record Information

Version

2.0

Created at

2024-09-11 22:36:07 UTC

Updated at

2024-09-11 22:36:07 UTC

NP-MRD ID

NP0339590

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-methylsulfinylpentyl glucosinolate

Description

Based on a literature review very few articles have been published on 5-methylsulfinylpentyl glucosinolate.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05272301082D          

 27 27  0  0  0  0            999 V2000
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.8250    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    0.0000    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    9.5901   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4151    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -0.4125    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    9.2881   -1.2375    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  4  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  2  0  0  0  0
 12 15  1  0  0  0  0
  9 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 17 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  CHG  1  15  -1
M  END


  Mrv2104 05272301082D          

 27 27  0  0  0  0            999 V2000
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.8250    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026    0.0000    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    9.5901   -0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4151    0.7145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -0.4125    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    9.2881   -1.2375    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  4  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  2  0  0  0  0
 12 15  1  0  0  0  0
  9 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 17 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  CHG  1  15  -1
M  END
> <DATABASE_ID>
NP0339590

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CS(=O)CCCCCC(SC1OC(CO)C(O)C(O)C1O)=NOS([O-])(=O)=O

> <INCHI_IDENTIFIER>
InChI=1/C13H25NO10S3/c1-26(19)6-4-2-3-5-9(14-24-27(20,21)22)25-13-12(18)11(17)10(16)8(7-15)23-13/h8,10-13,15-18H,2-7H2,1H3,(H,20,21,22)/p-1

> <INCHI_KEY>
HUCGRJSHMZWRQQ-UHFFFAOYNA-M

> <FORMULA>
C13H24NO10S3

> <MOLECULAR_WEIGHT>
450.51

> <EXACT_MASS>
450.056783079

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
43.17261473051633

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(hydroxymethyl)-6-({6-methanesulfinyl-1-[(sulfonatooxy)imino]hexyl}sulfanyl)oxane-3,4,5-triol

> <JCHEM_LOGP>
-4.183237105370589

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.447675813477717

> <JCHEM_PKA_STRONGEST_ACIDIC>
-3.604369580815352

> <JCHEM_PKA_STRONGEST_BASIC>
-0.37943718192965625

> <JCHEM_POLAR_SURFACE_AREA>
186.01

> <JCHEM_REFRACTIVITY>
97.09830000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-(hydroxymethyl)-6-({6-methanesulfinyl-1-[(sulfonatooxy)imino]hexyl}sulfanyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-MAY-23         0                                  
HETATM    1  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM    2  S   UNK     0       8.002  -1.540   0.000  0.00  0.00           S+0
HETATM    3  O   UNK     0       8.002   0.000   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.669  -1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.003  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      13.337  -1.540   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      14.670  -2.310   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      16.004  -1.540   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0      16.004   0.000   0.000  0.00  0.00           N+0
HETATM   11  O   UNK     0      17.338   0.770   0.000  0.00  0.00           O+0
HETATM   12  S   UNK     0      18.672   0.000   0.000  0.00  0.00           S+0
HETATM   13  O   UNK     0      17.902  -1.334   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      19.442   1.334   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      20.005  -0.770   0.000  0.00  0.00           O-1
HETATM   16  S   UNK     0      17.338  -2.310   0.000  0.00  0.00           S+0
HETATM   17  C   UNK     0      17.338  -3.850   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      18.672  -4.620   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      18.672  -6.160   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      20.005  -6.930   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      21.339  -6.160   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      17.338  -6.930   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      17.338  -8.470   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      16.004  -6.160   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      14.670  -6.930   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      14.670  -3.850   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   16                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12                                                            
CONECT   16    9   17                                                       
CONECT   17   16   18   26                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   17   27                                                  
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   54    0
END

View in JSmol

Synonyms

Value	Source
5-Methylsulfinylpentyl glucosinolic acid	Generator
5-Methylsulphinylpentyl glucosinolate	Generator
5-Methylsulphinylpentyl glucosinolic acid	Generator

Chemical Formula

C₁₃H₂₄NO₁₀S₃

Average Mass

450.5100 Da

Monoisotopic Mass

450.05678 Da

IUPAC Name

2-(hydroxymethyl)-6-({6-methanesulfinyl-1-[(sulfonatooxy)imino]hexyl}sulfanyl)oxane-3,4,5-triol

Traditional Name

2-(hydroxymethyl)-6-({6-methanesulfinyl-1-[(sulfonatooxy)imino]hexyl}sulfanyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CS(=O)CCCCCC(SC1OC(CO)C(O)C(O)C1O)=NOS([O-])(=O)=O

InChI Identifier

InChI=1/C13H25NO10S3/c1-26(19)6-4-2-3-5-9(14-24-27(20,21)22)25-13-12(18)11(17)10(16)8(7-15)23-13/h8,10-13,15-18H,2-7H2,1H3,(H,20,21,22)/p-1

InChI Key

HUCGRJSHMZWRQQ-UHFFFAOYNA-M

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-4.2	ChemAxon
pKa (Strongest Acidic)	-3.6	ChemAxon
pKa (Strongest Basic)	-0.38	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	186.01 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	97.1 m³·mol⁻¹	ChemAxon
Polarizability	43.17 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for 5-methylsulfinylpentyl glucosinolate (NP0339590)

MOL for NP0339590 (5-methylsulfinylpentyl glucosinolate)

3D MOL for NP0339590 (5-methylsulfinylpentyl glucosinolate)

3D SDF for NP0339590 (5-methylsulfinylpentyl glucosinolate)

3D-SDF for NP0339590 (5-methylsulfinylpentyl glucosinolate)

PDB for NP0339590 (5-methylsulfinylpentyl glucosinolate)

3D PDB for NP0339590 (5-methylsulfinylpentyl glucosinolate)

SMILES for NP0339590 (5-methylsulfinylpentyl glucosinolate)

INCHI for NP0339590 (5-methylsulfinylpentyl glucosinolate)

Structure for NP0339590 (5-methylsulfinylpentyl glucosinolate)

3D Structure for NP0339590 (5-methylsulfinylpentyl glucosinolate)