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Showing NP-Card for 2-Hydroxymyristoylcarnitine (NP0339205)

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Record Information
Version2.0
Created at2024-09-11 20:23:58 UTC
Updated at2024-09-11 20:23:58 UTC
NP-MRD IDNP0339205
Secondary Accession NumbersNone
Natural Product Identification
Common Name2-Hydroxymyristoylcarnitine
Description2-Hydroxymyristoylcarnitine belongs to the class of organic compounds known as acyl carnitines. These are organic compounds containing a fatty acid with the carboxylic acid attached to carnitine through an ester bond. Based on a literature review very few articles have been published on 2-Hydroxymyristoylcarnitine.
Structure
Thumb
MOLSDFPDBSMILESInChI

MOL for NP0339205 (2-Hydroxymyristoylcarnitine)


  Mrv2104 05262322562D          

 27 26  0  0  0  0            999 V2000
   11.2120   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9264   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6409   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3554   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0699   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7844   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4988   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2133   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -9.9366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.6423   -8.6991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.6423   -7.8741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3567   -7.4616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0713   -7.8741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0713   -8.6991    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   19.7857   -7.4616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -7.4616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -6.6366    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   17.7528   -6.6366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1028   -6.6366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -5.8116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4975   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7830   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0686   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2133   -7.8740    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3541   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6396   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  2  0  0  0  0
 11  9  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 12 11  1  0  0  0  0
 14 16  2  0  0  0  0
 17 12  1  0  0  0  0
 18 17  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 18 21  1  0  0  0  0
 22  1  1  0  0  0  0
 23 22  1  0  0  0  0
 24 23  1  0  0  0  0
 25  8  1  0  0  0  0
 26 24  1  0  0  0  0
 27 26  1  0  0  0  0
M  CHG  2  15  -1  18   1
M  END
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3D MOL for NP0339205 (2-Hydroxymyristoylcarnitine)

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3D SDF for NP0339205 (2-Hydroxymyristoylcarnitine)

  Mrv2104 05262322562D          

 27 26  0  0  0  0            999 V2000
   11.2120   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9264   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6409   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3554   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0699   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7844   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.4988   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2133   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -9.9366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.6423   -8.6991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.6423   -7.8741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.3567   -7.4616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0713   -7.8741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0713   -8.6991    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   19.7857   -7.4616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -7.4616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -6.6366    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   17.7528   -6.6366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.1028   -6.6366    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9278   -5.8116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4975   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7830   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0686   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2133   -7.8740    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3541   -9.1116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6396   -8.6991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  2  0  0  0  0
 11  9  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 12 11  1  0  0  0  0
 14 16  2  0  0  0  0
 17 12  1  0  0  0  0
 18 17  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 18 21  1  0  0  0  0
 22  1  1  0  0  0  0
 23 22  1  0  0  0  0
 24 23  1  0  0  0  0
 25  8  1  0  0  0  0
 26 24  1  0  0  0  0
 27 26  1  0  0  0  0
M  CHG  2  15  -1  18   1
M  END
> <DATABASE_ID>
NP0339205

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCC(O)C(=O)OC(CC([O-])=O)C[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1/C21H41NO5/c1-5-6-7-8-9-10-11-12-13-14-15-19(23)21(26)27-18(16-20(24)25)17-22(2,3)4/h18-19,23H,5-17H2,1-4H3

> <INCHI_KEY>
WWDZVVWQNWNRDM-UHFFFAOYNA-N

> <FORMULA>
C21H41NO5

> <MOLECULAR_WEIGHT>
387.561

> <EXACT_MASS>
387.298473424

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
47.03015708669572

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[(2-hydroxytetradecanoyl)oxy]-4-(trimethylazaniumyl)butanoate

> <JCHEM_LOGP>
0.2733446035282538

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.70403588929113

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.102434141023542

> <JCHEM_PKA_STRONGEST_BASIC>
-3.8031681922566487

> <JCHEM_POLAR_SURFACE_AREA>
86.66000000000001

> <JCHEM_REFRACTIVITY>
129.3669

> <JCHEM_ROTATABLE_BOND_COUNT>
18

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3-[(2-hydroxytetradecanoyl)oxy]-4-(trimethylammonio)butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for NP0339205 (2-Hydroxymyristoylcarnitine)
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PDB for NP0339205 (2-Hydroxymyristoylcarnitine)
HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  C   UNK     0      20.929 -17.008   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      22.263 -16.238   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      23.596 -17.008   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      24.930 -16.238   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      26.264 -17.008   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      27.598 -16.238   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      28.931 -17.008   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      30.265 -16.238   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      31.599 -17.008   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      31.599 -18.548   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      32.932 -16.238   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      32.932 -14.698   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      34.266 -13.928   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      35.600 -14.698   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      35.600 -16.238   0.000  0.00  0.00           O-1
HETATM   16  O   UNK     0      36.933 -13.928   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      31.599 -13.928   0.000  0.00  0.00           C+0
HETATM   18  N   UNK     0      31.599 -12.388   0.000  0.00  0.00           N+1
HETATM   19  C   UNK     0      33.139 -12.388   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      30.059 -12.388   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      31.599 -10.848   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      19.595 -16.238   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      18.262 -17.008   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      16.928 -16.238   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      30.265 -14.698   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      15.594 -17.008   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.261 -16.238   0.000  0.00  0.00           C+0
CONECT    1    2   22                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   25                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   13   11   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   12   18                                                       
CONECT   18   17   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   18                                                            
CONECT   22    1   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   26                                                       
CONECT   25    8                                                            
CONECT   26   24   27                                                       
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   52    0
END

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3D PDB for NP0339205 (2-Hydroxymyristoylcarnitine)
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SMILES for NP0339205 (2-Hydroxymyristoylcarnitine)
CCCCCCCCCCCCC(O)C(=O)OC(CC([O-])=O)C[N+](C)(C)C
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INCHI for NP0339205 (2-Hydroxymyristoylcarnitine)
InChI=1/C21H41NO5/c1-5-6-7-8-9-10-11-12-13-14-15-19(23)21(26)27-18(16-20(24)25)17-22(2,3)4/h18-19,23H,5-17H2,1-4H3
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SynonymsNot Available
Chemical FormulaC21H41NO5
Average Mass387.5610 Da
Monoisotopic Mass387.29847 Da
IUPAC Name3-[(2-hydroxytetradecanoyl)oxy]-4-(trimethylazaniumyl)butanoate
Traditional Name3-[(2-hydroxytetradecanoyl)oxy]-4-(trimethylammonio)butanoate
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCC(O)C(=O)OC(CC([O-])=O)C[N+](C)(C)C
InChI Identifier
InChI=1/C21H41NO5/c1-5-6-7-8-9-10-11-12-13-14-15-19(23)21(26)27-18(16-20(24)25)17-22(2,3)4/h18-19,23H,5-17H2,1-4H3
InChI KeyWWDZVVWQNWNRDM-UHFFFAOYNA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as acyl carnitines. These are organic compounds containing a fatty acid with the carboxylic acid attached to carnitine through an ester bond.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassFatty Acyls  
Sub ClassFatty acid esters  
Direct ParentAcyl carnitines  
Alternative Parents
Substituents
  • Acyl-carnitine
    • 

  • Dicarboxylic acid or derivatives
    • 

  • Monosaccharide
    • 

  • Tetraalkylammonium salt
    • 

  • Quaternary ammonium salt
    • 

  • Carboxylic acid ester
    • 

  • Carboxylic acid salt
    • 

  • Secondary alcohol
    • 

  • Carboxylic acid derivative
    • 

  • Carboxylic acid
    • 

  • Organic nitrogen compound
    • 

  • Organooxygen compound
    • 

  • Organonitrogen compound
    • 

  • Organic zwitterion
    • 

  • Organic salt
    • 

  • Hydrocarbon derivative
    • 

  • Organic oxide
    • 

  • Organopnictogen compound
    • 

  • Organic oxygen compound
    • 

  • Carbonyl group
    • 

  • Amine
    • 

  • Alcohol
    • 

  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.27ChemAxon
pKa (Strongest Acidic)4.1ChemAxon
pKa (Strongest Basic)-3.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area86.66 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity129.37 m³·mol⁻¹ChemAxon
Polarizability47.03 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available