Np mrd loader

Record Information
Version2.0
Created at2024-09-11 18:45:07 UTC
Updated at2024-09-11 18:45:08 UTC
NP-MRD IDNP0338923
Secondary Accession NumbersNone
Natural Product Identification
Common NameN-Palmitoylsphingosine
DescriptionN-Palmitoylsphingosine belongs to the class of organic compounds known as ceramides. These are lipid molecules containing a sphingosine in which the amine group is linked to a fatty acid. N-Palmitoylsphingosine was first documented in 2012 (PMID: 22366204). Based on a literature review a small amount of articles have been published on N-Palmitoylsphingosine (PMID: 34313944) (PMID: 33131908) (PMID: 29466860) (PMID: 29017324).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC34H67NO3
Average Mass537.9140 Da
Monoisotopic Mass537.51210 Da
IUPAC NameN-(1,3-dihydroxyoctadec-4-en-2-yl)hexadecanamide
Traditional NameN-(1,3-dihydroxyoctadec-4-en-2-yl)hexadecanamide
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCC(=O)NC(CO)C(O)C=CCCCCCCCCCCCCC
InChI Identifier
InChI=1/C34H67NO3/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-33(37)32(31-36)35-34(38)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h27,29,32-33,36-37H,3-26,28,30-31H2,1-2H3,(H,35,38)
InChI KeyYDNKGFDKKRUKPY-UHFFFAOYNA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as ceramides. These are lipid molecules containing a sphingosine in which the amine group is linked to a fatty acid.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSphingolipids
Sub ClassCeramides
Direct ParentCeramides
Alternative Parents
Substituents
  • Ceramide
  • Fatty amide
  • N-acyl-amine
  • Fatty acyl
  • Carboxamide group
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Carboxylic acid derivative
  • Primary alcohol
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Alcohol
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP10.87ChemAxon
pKa (Strongest Acidic)13.62ChemAxon
pKa (Strongest Basic)-1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area69.56 ŲChemAxon
Rotatable Bond Count30ChemAxon
Refractivity165.78 m³·mol⁻¹ChemAxon
Polarizability72.1 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hao Z, Tao K, Wu K, Luo Y, Lu Y, Li B, Shi P, Wang P, Zeng X, Lin Y: Alterations of gut microbiome and metabolite profiles in choledocholithiasis concurrent with cholangitis. Hepatol Int. 2022 Apr;16(2):447-462. doi: 10.1007/s12072-021-10231-5. Epub 2021 Jul 27. [PubMed:34313944 ]
  2. Zhao Y, Xu H, Tian Z, Wang X, Xu L, Li K, Gao X, Fan D, Ma X, Ling W, Yang Y: Dose-dependent reductions in plasma ceramides after anthocyanin supplementation are associated with improvements in plasma lipids and cholesterol efflux capacity in dyslipidemia: A randomized controlled trial. Clin Nutr. 2021 Apr;40(4):1871-1878. doi: 10.1016/j.clnu.2020.10.014. Epub 2020 Oct 15. [PubMed:33131908 ]
  3. Wang E, Klauda JB: Simulations of Pure Ceramide and Ternary Lipid Mixtures as Simple Interior Stratum Corneum Models. J Phys Chem B. 2018 Mar 15;122(10):2757-2768. doi: 10.1021/acs.jpcb.8b00348. Epub 2018 Mar 2. [PubMed:29466860 ]
  4. Wang E, Klauda JB: Molecular Dynamics Simulations of Ceramide and Ceramide-Phosphatidylcholine Bilayers. J Phys Chem B. 2017 Nov 2;121(43):10091-10104. doi: 10.1021/acs.jpcb.7b08967. Epub 2017 Oct 20. [PubMed:29017324 ]
  5. Kwak S, Brief E, Langlais D, Kitson N, Lafleur M, Thewalt J: Ethanol perturbs lipid organization in models of stratum corneum membranes: An investigation combining differential scanning calorimetry, infrared and (2)H NMR spectroscopy. Biochim Biophys Acta. 2012 May;1818(5):1410-9. doi: 10.1016/j.bbamem.2012.02.013. Epub 2012 Feb 16. [PubMed:22366204 ]