Np mrd loader

Showing NP-Card for (3''-Apiosyl-6''-malonyl)astragalin (NP0338299)

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Record Information
Version2.0
Created at2024-09-11 14:48:03 UTC
Updated at2024-09-11 14:48:03 UTC
NP-MRD IDNP0338299
Secondary Accession NumbersNone
Natural Product Identification
Common Name(3''-Apiosyl-6''-malonyl)astragalin
Description It was first documented in 2024 (PMID: 39128953). Based on a literature review a significant number of articles have been published on (3''-Apiosyl-6''-malonyl)astragalin (PMID: 39120263) (PMID: 39108625) (PMID: 39107952) (PMID: 39069711).
Structure
Thumb
MOLSDFPDBSMILESInChI

MOL for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)


  Mrv2104 05262317202D          

 47 51  0  0  0  0            999 V2000
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5063   -6.3911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8743   -6.2195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0000   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 47 27  1  0  0  0  0
M  END
Download

3D MOL for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)

Download
3D SDF for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)

  Mrv2104 05262317202D          

 47 51  0  0  0  0            999 V2000
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
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 47 25  1  0  0  0  0
 47 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0338299

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCC1(O)COC(OC2C(O)C(COC(=O)CC(O)=O)OC(OC3=C(OC4=CC(O)=CC(O)=C4C3=O)C3=CC=C(O)C=C3)C2O)C1O

> <INCHI_IDENTIFIER>
InChI=1/C29H30O18/c30-9-29(41)10-43-28(26(29)40)46-24-20(37)16(8-42-18(36)7-17(34)35)45-27(22(24)39)47-25-21(38)19-14(33)5-13(32)6-15(19)44-23(25)11-1-3-12(31)4-2-11/h1-6,16,20,22,24,26-28,30-33,37,39-41H,7-10H2,(H,34,35)

> <INCHI_KEY>
OQHJOYJQTQSHRY-UHFFFAOYNA-N

> <FORMULA>
C29H30O18

> <MOLECULAR_WEIGHT>
666.541

> <EXACT_MASS>
666.143214126

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
62.38098583971519

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(6-{[5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl]oxy}-4-{[3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}-3,5-dihydroxyoxan-2-yl)methoxy]-3-oxopropanoic acid

> <JCHEM_LOGP>
-0.7844151779999995

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.372809470665355

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.413356478109414

> <JCHEM_PKA_STRONGEST_BASIC>
-3.655970970962883

> <JCHEM_POLAR_SURFACE_AREA>
288.66

> <JCHEM_REFRACTIVITY>
149.46040000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
3-[(6-{[5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxochromen-3-yl]oxy}-4-{[3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}-3,5-dihydroxyoxan-2-yl)methoxy]-3-oxopropanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

Download
3D-SDF for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)
Download
PDB for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)
HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.278 -11.930   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.232 -11.610   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.248 -10.145   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.772 -11.610   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      11.309 -10.786   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0      -2.667   0.000   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       0.000  -4.620   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      -2.667  -9.240   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      -4.001  -6.930   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0       0.000  -9.240   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0       5.335  -9.240   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0       8.002  -4.620   0.000  0.00  0.00           O+0
HETATM   40  O   UNK     0      10.713  -9.669   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0       8.611 -13.141   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0       1.334  -6.930   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0       6.756 -10.145   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0       2.667   0.000   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0       4.001  -5.390   0.000  0.00  0.00           O+0
HETATM   46  O   UNK     0       8.002  -7.700   0.000  0.00  0.00           O+0
HETATM   47  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
CONECT    1    3   11                                                       
CONECT    2    4   11                                                       
CONECT    3    1   12                                                       
CONECT    4    2   12                                                       
CONECT    5   13   14                                                       
CONECT    6   13   15                                                       
CONECT    7   17   18                                                       
CONECT    8   16   42                                                       
CONECT    9   29   30                                                       
CONECT   10   29   43                                                       
CONECT   11    1    2   23                                                  
CONECT   12    3    4   31                                                  
CONECT   13    5    6   32                                                  
CONECT   14    5   19   33                                                  
CONECT   15    6   19   44                                                  
CONECT   16    8   20   45                                                  
CONECT   17    7   34   35                                                  
CONECT   18    7   36   42                                                  
CONECT   19   14   15   21                                                  
CONECT   20   16   24   37                                                  
CONECT   21   19   25   38                                                  
CONECT   22   24   27   39                                                  
CONECT   23   11   25   44                                                  
CONECT   24   20   22   46                                                  
CONECT   25   21   23   47                                                  
CONECT   26   28   29   40                                                  
CONECT   27   22   45   47                                                  
CONECT   28   26   43   46                                                  
CONECT   29    9   10   26   41                                             
CONECT   30    9                                                            
CONECT   31   12                                                            
CONECT   32   13                                                            
CONECT   33   14                                                            
CONECT   34   17                                                            
CONECT   35   17                                                            
CONECT   36   18                                                            
CONECT   37   20                                                            
CONECT   38   21                                                            
CONECT   39   22                                                            
CONECT   40   26                                                            
CONECT   41   29                                                            
CONECT   42    8   18                                                       
CONECT   43   10   28                                                       
CONECT   44   15   23                                                       
CONECT   45   16   27                                                       
CONECT   46   24   28                                                       
CONECT   47   25   27                                                       
MASTER        0    0    0    0    0    0    0    0   47    0  102    0
END

Download
3D PDB for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)
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SMILES for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)
OCC1(O)COC(OC2C(O)C(COC(=O)CC(O)=O)OC(OC3=C(OC4=CC(O)=CC(O)=C4C3=O)C3=CC=C(O)C=C3)C2O)C1O
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INCHI for NP0338299 ((3''-Apiosyl-6''-malonyl)astragalin)
InChI=1/C29H30O18/c30-9-29(41)10-43-28(26(29)40)46-24-20(37)16(8-42-18(36)7-17(34)35)45-27(22(24)39)47-25-21(38)19-14(33)5-13(32)6-15(19)44-23(25)11-1-3-12(31)4-2-11/h1-6,16,20,22,24,26-28,30-33,37,39-41H,7-10H2,(H,34,35)
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View in JSmol
SynonymsNot Available
Chemical FormulaC29H30O18
Average Mass666.5410 Da
Monoisotopic Mass666.14321 Da
IUPAC Name3-[(6-{[5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl]oxy}-4-{[3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}-3,5-dihydroxyoxan-2-yl)methoxy]-3-oxopropanoic acid
Traditional Name3-[(6-{[5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxochromen-3-yl]oxy}-4-{[3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxy}-3,5-dihydroxyoxan-2-yl)methoxy]-3-oxopropanoic acid
CAS Registry NumberNot Available
SMILES
OCC1(O)COC(OC2C(O)C(COC(=O)CC(O)=O)OC(OC3=C(OC4=CC(O)=CC(O)=C4C3=O)C3=CC=C(O)C=C3)C2O)C1O
InChI Identifier
InChI=1/C29H30O18/c30-9-29(41)10-43-28(26(29)40)46-24-20(37)16(8-42-18(36)7-17(34)35)45-27(22(24)39)47-25-21(38)19-14(33)5-13(32)6-15(19)44-23(25)11-1-3-12(31)4-2-11/h1-6,16,20,22,24,26-28,30-33,37,39-41H,7-10H2,(H,34,35)
InChI KeyOQHJOYJQTQSHRY-UHFFFAOYNA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.78ChemAxon
pKa (Strongest Acidic)3.41ChemAxon
pKa (Strongest Basic)-3.7ChemAxon
Physiological Charge-2ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count9ChemAxon
Polar Surface Area288.66 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity149.46 m³·mol⁻¹ChemAxon
Polarizability62.38 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kostikova VA, Imetkhenova OV, Petrova NV: Interpopulation Variation of Leaf Polyphenol Content in Spiraea aquilegifolia (Rosaceae) from the Republic of Buryatia. Dokl Biol Sci. 2024 Aug 11. doi: 10.1134/S0012496624701138. [PubMed:39128953  ] 
  2. Song X, Shen L, Contreras JM, Liu Z, Ma K, Ma B, Liu X, Wang DO: New potential selective estrogen receptor modulators in traditional Chinese medicine for treating menopausal syndrome. Phytother Res. 2024 Aug 9. doi: 10.1002/ptr.8289. [PubMed:39120263  ] 
  3. Zhou K, Xiao S, Cao S, Zhao C, Zhang M, Fu Y: Improvement of glucolipid metabolism and oxidative stress via modulating PI3K/Akt pathway in insulin resistance HepG2 cells by chickpea flavonoids. Food Chem X. 2024 Jul 6;23:101630. doi: 10.1016/j.fochx.2024.101630. eCollection  2024 Oct 30. [PubMed:39108625  ] 
  4. Du R, Pei H, He Z, Wang J, Zhou X, Li W, Zhu D, Zhang C: Astragalin improves cognitive disorder in Alzheimer's disease: Based on network pharmacology and molecular docking simulation. CNS Neurosci Ther. 2024 Aug;30(8):e14799. doi: 10.1111/cns.14799. [PubMed:39107952  ] 
  5. Zeb A, Khan W, Ul Islam W, Khan F, Khan A, Khan H, Khalid A, Najeeb Ur Rehman, Ullah A, Al-Harrasi A: Exploring the Anticancer Potential of Astragalin in Triple Negative Breast Cancer Cells by Attenuating Glycolytic Pathway through AMPK/mTOR. Curr Med Chem. 2024 Jul 25. doi: 10.2174/0109298673304759240722064518. [PubMed:39069711  ]