NP-MRD: Showing NP-Card for 2-Benzyl-5-hydroxymethyl-1,3-dioxolane (NP0337630)

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Record Information

Version

2.0

Created at

2024-09-11 11:41:10 UTC

Updated at

2024-09-11 11:41:10 UTC

NP-MRD ID

NP0337630

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-Benzyl-5-hydroxymethyl-1,3-dioxolane

Description

2-Benzyl-5-hydroxymethyl-1,3-dioxolane belongs to the class of organic compounds known as benzene and substituted derivatives. These are aromatic compounds containing one monocyclic ring system consisting of benzene. Based on a literature review very few articles have been published on 2-Benzyl-5-hydroxymethyl-1,3-dioxolane.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05262314132D          

 14 15  0  0  0  0            999 V2000
    3.5749   -3.0221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0598   -2.3547    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7544   -2.9359    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7243   -1.6010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4189   -2.1822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5682   -0.7611    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1331    0.6910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9038   -1.5148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0531   -0.0937    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512    2.4134    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8781   -0.0937    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7982    0.6910    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  2  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  5  3  2  0  0  0  0
  9  4  2  0  0  0  0
  9  5  1  0  0  0  0
  9  6  1  0  0  0  0
 10  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  6  1  0  0  0  0
 12  7  1  0  0  0  0
 13  8  1  0  0  0  0
 13 11  1  0  0  0  0
 14 10  1  0  0  0  0
 14 11  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0337630

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCC1COC(CC2=CC=CC=C2)O1

> <INCHI_IDENTIFIER>
InChI=1/C11H14O3/c12-7-10-8-13-11(14-10)6-9-4-2-1-3-5-9/h1-5,10-12H,6-8H2

> <INCHI_KEY>
ZPENOSKWEKGDCX-UHFFFAOYNA-N

> <FORMULA>
C11H14O3

> <MOLECULAR_WEIGHT>
194.23

> <EXACT_MASS>
194.094294311

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
20.724671808705438

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2-benzyl-1,3-dioxolan-4-yl)methanol

> <JCHEM_LOGP>
1.3860249679999999

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.597026101854771

> <JCHEM_PKA_STRONGEST_BASIC>
-2.975060783048722

> <JCHEM_POLAR_SURFACE_AREA>
38.69

> <JCHEM_REFRACTIVITY>
52.26510000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
phenylacetaldehyde glyceryl cyclic acetals

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  C   UNK     0       6.673  -5.641   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.578  -4.395   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.142  -5.480   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.952  -2.989   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.515  -4.073   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.794  -1.421   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.469   3.735   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.715   1.290   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.420  -2.828   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.469   2.195   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.699  -0.175   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.136   4.505   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       7.239  -0.175   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       5.223   1.290   0.000  0.00  0.00           O+0
CONECT    1    2    3                                                       
CONECT    2    1    4                                                       
CONECT    3    1    5                                                       
CONECT    4    2    9                                                       
CONECT    5    3    9                                                       
CONECT    6    9   11                                                       
CONECT    7   10   12                                                       
CONECT    8   10   13                                                       
CONECT    9    4    5    6                                                  
CONECT   10    7    8   14                                                  
CONECT   11    6   13   14                                                  
CONECT   12    7                                                            
CONECT   13    8   11                                                       
CONECT   14   10   11                                                       
MASTER        0    0    0    0    0    0    0    0   14    0   30    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₁₄O₃

Average Mass

194.2300 Da

Monoisotopic Mass

194.09429 Da

IUPAC Name

(2-benzyl-1,3-dioxolan-4-yl)methanol

Traditional Name

phenylacetaldehyde glyceryl cyclic acetals

CAS Registry Number

Not Available

SMILES

OCC1COC(CC2=CC=CC=C2)O1

InChI Identifier

InChI=1/C11H14O3/c12-7-10-8-13-11(14-10)6-9-4-2-1-3-5-9/h1-5,10-12H,6-8H2

InChI Key

ZPENOSKWEKGDCX-UHFFFAOYNA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as benzene and substituted derivatives. These are aromatic compounds containing one monocyclic ring system consisting of benzene.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Not Available

Direct Parent

Benzene and substituted derivatives

Alternative Parents

Substituents

Monocyclic benzene moiety
Meta-dioxolane
Oxacycle
Organoheterocyclic compound
Acetal
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.39	ChemAxon
pKa (Strongest Acidic)	14.6	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	38.69 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	52.27 m³·mol⁻¹	ChemAxon
Polarizability	20.72 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for 2-Benzyl-5-hydroxymethyl-1,3-dioxolane (NP0337630)

MOL for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

3D MOL for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

3D SDF for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

3D-SDF for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

PDB for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

3D PDB for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

SMILES for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

INCHI for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

Structure for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)

3D Structure for NP0337630 (2-Benzyl-5-hydroxymethyl-1,3-dioxolane)