NP-MRD: Showing NP-Card for Quercetin 3-arabinoside (NP0336728)

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Record Information

Version

2.0

Created at

2024-09-11 07:35:03 UTC

Updated at

2024-09-11 07:35:03 UTC

NP-MRD ID

NP0336728

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Quercetin 3-arabinoside

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05262310072D          

 31 34  0  0  0  0            999 V2000
   -1.7862   -1.3107    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7862   -0.4857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5012   -0.0732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5012    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7862    1.1643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0725    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0725   -0.0732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3575   -0.4857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3575   -1.3107    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2148    1.1643    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3575   -0.0732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3575    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3575    1.1643    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7861    3.2268    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7861    2.4018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0711    1.9893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0711    1.1643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7861    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5011    1.1643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5011    1.9893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2148    2.4018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3260   -1.2703    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8411   -1.9377    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3260   -2.6051    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1107   -2.3502    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1107   -1.5252    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0711   -0.4857    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7781   -1.0403    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7781   -2.8351    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0711   -3.3898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6231   -4.0029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  7  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4 10  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6 13  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 11  1  0  0  0  0
 27 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 17  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 20  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 22 26  1  0  0  0  0
 22 27  1  6  0  0  0
 26 28  1  6  0  0  0
 25 29  1  1  0  0  0
 24 30  1  6  0  0  0
 30 31  1  0  0  0  0
M  END


  Mrv2104 05262310072D          

 31 34  0  0  0  0            999 V2000
   -1.7862   -1.3107    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7862   -0.4857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5012   -0.0732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5012    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7862    1.1643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0725    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0725   -0.0732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3575   -0.4857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3575   -1.3107    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2148    1.1643    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3575   -0.0732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3575    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3575    1.1643    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7861    3.2268    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7861    2.4018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0711    1.9893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0711    1.1643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7861    0.7517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5011    1.1643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5011    1.9893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2148    2.4018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3260   -1.2703    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8411   -1.9377    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3260   -2.6051    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1107   -2.3502    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1107   -1.5252    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0711   -0.4857    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7781   -1.0403    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7781   -2.8351    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0711   -3.3898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6231   -4.0029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  7  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4 10  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6 13  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 11  1  0  0  0  0
 27 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 17  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 20  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 22 26  1  0  0  0  0
 22 27  1  6  0  0  0
 26 28  1  6  0  0  0
 25 29  1  1  0  0  0
 24 30  1  6  0  0  0
 30 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0336728

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@@H]1O[C@H](OC2=C(OC3=C(C(O)=CC(O)=C3)C2=O)C2=CC=C(O)C(O)=C2)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1/C20H18O11/c21-6-13-15(26)17(28)20(30-13)31-19-16(27)14-11(25)4-8(22)5-12(14)29-18(19)7-1-2-9(23)10(24)3-7/h1-5,13,15,17,20-26,28H,6H2/t13-,15-,17+,20+/s2

> <INCHI_KEY>
BDCDNTVZSILEOY-ITOUDFAFNA-N

> <FORMULA>
C20H18O11

> <MOLECULAR_WEIGHT>
434.353

> <EXACT_MASS>
434.0849114

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
41.04760878313979

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-{[(2R,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one

> <JCHEM_LOGP>
0.4854996460000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.872523610896667

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.372405621031869

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981152416465515

> <JCHEM_POLAR_SURFACE_AREA>
186.37

> <JCHEM_REFRACTIVITY>
103.31299999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
3-{[(2R,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  O   UNK     0      -3.334  -2.447   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -3.334  -0.907   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.669  -0.137   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.669   1.403   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.334   2.173   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.002   1.403   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.002  -0.137   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.667  -0.907   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.667  -2.447   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0      -6.001   2.173   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.667  -0.137   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.667   1.403   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -0.667   2.173   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       3.334   6.023   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       3.334   4.483   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.999   3.713   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.999   2.173   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.334   1.403   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.669   2.173   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.669   3.713   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       6.001   4.483   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       2.475  -2.371   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       1.570  -3.617   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.475  -4.863   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.940  -4.387   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.940  -2.847   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       1.999  -0.907   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       5.186  -1.942   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       5.186  -5.292   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       1.999  -6.328   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       3.030  -7.472   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   13                                                  
CONECT    7    2    6    8                                                  
CONECT    8    7    9   11                                                  
CONECT    9    8                                                            
CONECT   10    4                                                            
CONECT   11    8   27   12                                                  
CONECT   12   11   13   17                                                  
CONECT   13    6   12                                                       
CONECT   14   15                                                            
CONECT   15   14   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   12   16   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   15   19   21                                                  
CONECT   21   20                                                            
CONECT   22   23   26   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   30                                                  
CONECT   25   24   26   29                                                  
CONECT   26   25   22   28                                                  
CONECT   27   11   22                                                       
CONECT   28   26                                                            
CONECT   29   25                                                            
CONECT   30   24   31                                                       
CONECT   31   30                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₁₈O₁₁

Average Mass

434.3530 Da

Monoisotopic Mass

434.08491 Da

IUPAC Name

3-{[(2R,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one

Traditional Name

3-{[(2R,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromen-4-one

CAS Registry Number

Not Available

SMILES

OC[C@@H]1O[C@H](OC2=C(OC3=C(C(O)=CC(O)=C3)C2=O)C2=CC=C(O)C(O)=C2)[C@H](O)[C@H]1O

InChI Identifier

InChI=1/C20H18O11/c21-6-13-15(26)17(28)20(30-13)31-19-16(27)14-11(25)4-8(22)5-12(14)29-18(19)7-1-2-9(23)10(24)3-7/h1-5,13,15,17,20-26,28H,6H2/t13-,15-,17+,20+/s2

InChI Key

BDCDNTVZSILEOY-ITOUDFAFNA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.49	ChemAxon
pKa (Strongest Acidic)	6.37	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	186.37 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	103.31 m³·mol⁻¹	ChemAxon
Polarizability	41.05 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Not Available

Showing NP-Card for Quercetin 3-arabinoside (NP0336728)

MOL for NP0336728 (Quercetin 3-arabinoside)

3D MOL for NP0336728 (Quercetin 3-arabinoside)

3D SDF for NP0336728 (Quercetin 3-arabinoside)

3D-SDF for NP0336728 (Quercetin 3-arabinoside)

PDB for NP0336728 (Quercetin 3-arabinoside)

3D PDB for NP0336728 (Quercetin 3-arabinoside)

SMILES for NP0336728 (Quercetin 3-arabinoside)

INCHI for NP0336728 (Quercetin 3-arabinoside)

Structure for NP0336728 (Quercetin 3-arabinoside)

3D Structure for NP0336728 (Quercetin 3-arabinoside)