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Showing NP-Card for Cholest-7-en-3beta-ol (NP0336507)

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Record Information
Version2.0
Created at2024-09-11 06:35:03 UTC
Updated at2024-09-11 06:35:03 UTC
NP-MRD IDNP0336507
Secondary Accession NumbersNone
Natural Product Identification
Common NameCholest-7-en-3beta-ol
DescriptionCholest-7-en-3beta-ol belongs to the class of organic compounds known as cholesterols and derivatives. Cholesterols and derivatives are compounds containing a 3-hydroxylated cholestane core. Cholest-7-en-3beta-ol was first documented in 2006 (PMID: 16835224). Based on a literature review a small amount of articles have been published on Cholest-7-en-3beta-ol (PMID: 35246768) (PMID: 19821610).
Structure
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MOLSDFPDBSMILESInChI

MOL for NP0336507 (Cholest-7-en-3beta-ol)


  Mrv2104 05262309072D          

 28 31  0  0  0  0            999 V2000
   -2.3388   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0533   -1.6284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0533   -2.4534    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3388   -2.8659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6244   -2.4534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6244   -1.6284    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9099   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9099   -2.8659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1954   -2.4534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1954   -1.6284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1954    0.0216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9099   -0.3909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2335    0.0216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5190   -0.3909    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5190   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9479   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9479   -0.3909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7678   -2.8659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6244   -0.8034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5190    0.4341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9480    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2335    0.8466    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6624    0.8466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3769    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0914    0.8466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8058    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0914    0.0216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5190    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  6  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3 18  1  1  0  0  0
  4  5  1  0  0  0  0
  6  5  1  0  0  0  0
  5  8  1  0  0  0  0
  7  6  1  0  0  0  0
  6 19  1  1  0  0  0
 12  7  1  0  0  0  0
  7 10  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 15  1  0  0  0  0
 11 12  1  0  0  0  0
 11 14  1  0  0  0  0
 13 14  1  0  0  0  0
 22 13  1  0  0  0  0
 13 17  1  0  0  0  0
 14 15  1  0  0  0  0
 14 20  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 22 28  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
M  END
Download

3D MOL for NP0336507 (Cholest-7-en-3beta-ol)

Download
3D SDF for NP0336507 (Cholest-7-en-3beta-ol)

  Mrv2104 05262309072D          

 28 31  0  0  0  0            999 V2000
   -2.3388   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0533   -1.6284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0533   -2.4534    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3388   -2.8659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6244   -2.4534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6244   -1.6284    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9099   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9099   -2.8659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1954   -2.4534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1954   -1.6284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1954    0.0216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9099   -0.3909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2335    0.0216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5190   -0.3909    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5190   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9479   -1.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9479   -0.3909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7678   -2.8659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6244   -0.8034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5190    0.4341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9480    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2335    0.8466    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6624    0.8466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3769    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0914    0.8466    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8058    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0914    0.0216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5190    1.2591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  6  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3 18  1  1  0  0  0
  4  5  1  0  0  0  0
  6  5  1  0  0  0  0
  5  8  1  0  0  0  0
  7  6  1  0  0  0  0
  6 19  1  1  0  0  0
 12  7  1  0  0  0  0
  7 10  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 15  1  0  0  0  0
 11 12  1  0  0  0  0
 11 14  1  0  0  0  0
 13 14  1  0  0  0  0
 22 13  1  0  0  0  0
 13 17  1  0  0  0  0
 14 15  1  0  0  0  0
 14 20  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 22 28  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0336507

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)CCC[C@@H](C)C1CCC2C3=CCC4C[C@@H](O)CC[C@]4(C)C3CC[C@]12C

> <INCHI_IDENTIFIER>
InChI=1/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h10,18-21,23-25,28H,6-9,11-17H2,1-5H3/t19-,20?,21+,23?,24?,25?,26+,27-/s2

> <INCHI_KEY>
IZVFFXVYBHFIHY-QKQKRJGNNA-N

> <FORMULA>
C27H46O

> <MOLECULAR_WEIGHT>
386.664

> <EXACT_MASS>
386.354866101

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
49.71230976250182

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(7S,9aS,11aR)-9a,11a-dimethyl-1-[(2R)-6-methylheptan-2-yl]-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-7-ol

> <JCHEM_LOGP>
7.112889030666665

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.361777845540015

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3283583703607977

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
120.61649999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(7S,9aS,11aR)-9a,11a-dimethyl-1-[(2R)-6-methylheptan-2-yl]-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9bH,10H,11H-cyclopenta[a]phenanthren-7-ol

> <JCHEM_VEBER_RULE>
1

$$$$

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3D-SDF for NP0336507 (Cholest-7-en-3beta-ol)
Download
PDB for NP0336507 (Cholest-7-en-3beta-ol)
HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  C   UNK     0      -4.366  -2.270   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.699  -3.040   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.699  -4.580   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.366  -5.350   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.032  -4.580   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.032  -3.040   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.698  -2.270   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.698  -5.350   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.365  -4.580   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.365  -3.040   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.365   0.040   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.698  -0.730   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.303   0.040   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.969  -0.730   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.969  -2.270   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.636  -2.270   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.636  -0.730   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -7.033  -5.350   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -3.032  -1.500   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.969   0.810   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.636   2.350   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.303   1.580   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.970   1.580   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.304   2.350   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.637   1.580   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       8.971   2.350   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.637   0.040   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.969   2.350   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    8                                                  
CONECT    6    1    5    7   19                                             
CONECT    7    6   12   10                                                  
CONECT    8    5    9                                                       
CONECT    9    8   10                                                       
CONECT   10    7    9   15                                                  
CONECT   11   12   14                                                       
CONECT   12    7   11                                                       
CONECT   13   14   22   17                                                  
CONECT   14   11   13   15   20                                             
CONECT   15   10   14   16                                                  
CONECT   16   15   17                                                       
CONECT   17   13   16                                                       
CONECT   18    3                                                            
CONECT   19    6                                                            
CONECT   20   14                                                            
CONECT   21   22   23                                                       
CONECT   22   13   21   28                                                  
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   22                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   62    0
END

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3D PDB for NP0336507 (Cholest-7-en-3beta-ol)
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SMILES for NP0336507 (Cholest-7-en-3beta-ol)
CC(C)CCC[C@@H](C)C1CCC2C3=CCC4C[C@@H](O)CC[C@]4(C)C3CC[C@]12C
Download
INCHI for NP0336507 (Cholest-7-en-3beta-ol)
InChI=1/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h10,18-21,23-25,28H,6-9,11-17H2,1-5H3/t19-,20?,21+,23?,24?,25?,26+,27-/s2
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View in JSmol
Synonyms
ValueSource
Cholest-7-en-3b-olGenerator
Cholest-7-en-3β-olGenerator
Chemical FormulaC27H46O
Average Mass386.6640 Da
Monoisotopic Mass386.35487 Da
IUPAC Name(7S,9aS,11aR)-9a,11a-dimethyl-1-[(2R)-6-methylheptan-2-yl]-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9aH,9bH,10H,11H,11aH-cyclopenta[a]phenanthren-7-ol
Traditional Name(7S,9aS,11aR)-9a,11a-dimethyl-1-[(2R)-6-methylheptan-2-yl]-1H,2H,3H,3aH,5H,5aH,6H,7H,8H,9H,9bH,10H,11H-cyclopenta[a]phenanthren-7-ol
CAS Registry NumberNot Available
SMILES
CC(C)CCC[C@@H](C)C1CCC2C3=CCC4C[C@@H](O)CC[C@]4(C)C3CC[C@]12C
InChI Identifier
InChI=1/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h10,18-21,23-25,28H,6-9,11-17H2,1-5H3/t19-,20?,21+,23?,24?,25?,26+,27-/s2
InChI KeyIZVFFXVYBHFIHY-QKQKRJGNNA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as cholesterols and derivatives. These are compounds containing a 3-hydroxylated cholestane core.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassSteroids and steroid derivatives  
Sub ClassCholestane steroids  
Direct ParentCholesterols and derivatives  
Alternative Parents
Substituents
  • Cholesterol-skeleton
    • 

  • Cholesterol
    • 

  • 3-beta-hydroxysteroid
    • 

  • Hydroxysteroid
    • 

  • 3-hydroxysteroid
    • 

  • 3-hydroxy-delta-7-steroid
    • 

  • Delta-7-steroid
    • 

  • Cyclic alcohol
    • 

  • Secondary alcohol
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Alcohol
    • 

  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP7.11ChemAxon
pKa (Strongest Acidic)18.36ChemAxon
pKa (Strongest Basic)-1.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity120.62 m³·mol⁻¹ChemAxon
Polarizability49.71 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Isaac-Marquez AP, Lezama-Davila CM: In vitro leishmanicidal activity of two cholesterol derivatives. World J Microbiol Biotechnol. 2022 Mar 5;38(4):66. doi:  10.1007/s11274-022-03248-x. [PubMed:35246768  ] 
  2. de Medina P, Paillasse MR, Payre B, Silvente-Poirot S, Poirot M: Synthesis of new alkylaminooxysterols with potent cell differentiating activities: identification of leads for the treatment of cancer and neurodegenerative diseases. J Med Chem. 2009 Dec 10;52(23):7765-77. doi: 10.1021/jm901063e. [PubMed:19821610  ] 
  3. Rahier A, Darnet S, Bouvier F, Camara B, Bard M: Molecular and enzymatic characterizations of novel bifunctional 3beta-hydroxysteroid dehydrogenases/C-4 decarboxylases from Arabidopsis thaliana. J Biol Chem. 2006 Sep 15;281(37):27264-77. doi: 10.1074/jbc.M604431200. Epub 2006  Jul 11. [PubMed:16835224  ]