NP-MRD: Showing NP-Card for (4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside (NP0336455)

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Record Information

Version

2.0

Created at

2024-09-11 06:20:10 UTC

Updated at

2024-09-11 06:20:11 UTC

NP-MRD ID

NP0336455

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside

Description

(4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone. Based on a literature review very few articles have been published on (4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05262308522D          

 23 24  0  0  0  0            999 V2000
    2.2036    4.7569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4653    4.0860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2534    0.8538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9679    2.0913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9679    2.9163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5390    2.9163    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5575    5.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6408    4.0572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2534    1.6788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5390    2.0913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1702    4.8432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6074    4.1436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2201    3.4152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6044    3.3864    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0416    4.0860    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2534    3.3288    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3820    5.6005    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8245    1.6788    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4319    4.1724    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6572    2.7155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9918    2.6579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6543    4.8144    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8661    4.0572    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  1  0  0  0  0
  8  1  1  0  0  0  0
  8  2  1  0  0  0  0
  9  3  1  0  0  0  0
  9  4  2  0  0  0  0
 10  6  1  0  0  0  0
 10  9  1  0  0  0  0
 11  7  1  0  0  0  0
 12 11  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 16  5  1  0  0  0  0
 16  6  1  0  0  0  0
 16  8  1  0  0  0  0
 17  7  1  0  0  0  0
 18 10  1  0  0  0  0
 19 12  1  0  0  0  0
 20 13  1  0  0  0  0
 21 14  1  0  0  0  0
 22 11  1  0  0  0  0
 22 15  1  0  0  0  0
 23 15  1  0  0  0  0
 23 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0336455

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1(CC=C(C)C(O)C1)OC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1/C16H28O7/c1-8(2)16(5-4-9(3)10(18)6-16)23-15-14(21)13(20)12(19)11(7-17)22-15/h4,8,10-15,17-21H,5-7H2,1-3H3

> <INCHI_KEY>
HLDKDYHDZWXFNX-UHFFFAOYNA-N

> <FORMULA>
C16H28O7

> <MOLECULAR_WEIGHT>
332.393

> <EXACT_MASS>
332.183503242

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
34.69562346828642

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-{[5-hydroxy-4-methyl-1-(propan-2-yl)cyclohex-3-en-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_LOGP>
-0.744235751000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.182246361781047

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.208070325274614

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810836760571835

> <JCHEM_POLAR_SURFACE_AREA>
119.61000000000001

> <JCHEM_REFRACTIVITY>
82.1931

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-[(5-hydroxy-1-isopropyl-4-methylcyclohex-3-en-1-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  C   UNK     0       4.113   8.880   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.469   7.627   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.206   1.594   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.540   3.904   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.540   5.444   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.873   5.444   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.041  10.401   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.929   7.573   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.206   3.134   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.873   3.904   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.318   9.041   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.134   7.735   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.411   6.375   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.128   6.321   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.944   7.627   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.206   6.214   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -2.580  10.454   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       1.539   3.134   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      -2.673   7.788   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      -1.227   5.069   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       1.851   4.961   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       1.221   8.987   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       3.483   7.573   0.000  0.00  0.00           O+0
CONECT    1    8                                                            
CONECT    2    8                                                            
CONECT    3    9                                                            
CONECT    4    5    9                                                       
CONECT    5    4   16                                                       
CONECT    6   10   16                                                       
CONECT    7   11   17                                                       
CONECT    8    1    2   16                                                  
CONECT    9    3    4   10                                                  
CONECT   10    6    9   18                                                  
CONECT   11    7   12   22                                                  
CONECT   12   11   13   19                                                  
CONECT   13   12   14   20                                                  
CONECT   14   13   15   21                                                  
CONECT   15   14   22   23                                                  
CONECT   16    5    6    8   23                                             
CONECT   17    7                                                            
CONECT   18   10                                                            
CONECT   19   12                                                            
CONECT   20   13                                                            
CONECT   21   14                                                            
CONECT   22   11   15                                                       
CONECT   23   15   16                                                       
MASTER        0    0    0    0    0    0    0    0   23    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₂₈O₇

Average Mass

332.3930 Da

Monoisotopic Mass

332.18350 Da

IUPAC Name

2-{[5-hydroxy-4-methyl-1-(propan-2-yl)cyclohex-3-en-1-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

2-[(5-hydroxy-1-isopropyl-4-methylcyclohex-3-en-1-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CC(C)C1(CC=C(C)C(O)C1)OC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1/C16H28O7/c1-8(2)16(5-4-9(3)10(18)6-16)23-15-14(21)13(20)12(19)11(7-17)22-15/h4,8,10-15,17-21H,5-7H2,1-3H3

InChI Key

HLDKDYHDZWXFNX-UHFFFAOYNA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Terpene glycosides

Alternative Parents

Substituents

Terpene glycoside
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Monocyclic monoterpenoid
Monoterpenoid
P-menthane monoterpenoid
Oxane
Monosaccharide
Secondary alcohol
Polyol
Oxacycle
Acetal
Organoheterocyclic compound
Primary alcohol
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.74	ChemAxon
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	119.61 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	82.19 m³·mol⁻¹	ChemAxon
Polarizability	34.7 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside (NP0336455)

MOL for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

3D MOL for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

3D SDF for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

3D-SDF for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

PDB for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

3D PDB for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

SMILES for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

INCHI for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

Structure for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)

3D Structure for NP0336455 ((4R,6S)-p-Menth-1-ene-4,6-diol 4-glucoside)