NP-MRD: Showing NP-Card for (S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside (NP0336354)

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Record Information

Version

2.0

Created at

2024-09-11 05:51:38 UTC

Updated at

2024-09-11 05:51:38 UTC

NP-MRD ID

NP0336354

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside

Description

Based on a literature review very few articles have been published on (S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05262308232D          

 17 17  0  0  0  0            999 V2000
    0.2262    2.7459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3634    1.8612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3634    0.0973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7775    2.7459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3686    1.8612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3686   -0.9985    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1960   -1.1563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9901   -1.3689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5731   -0.7859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3590    0.0109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5649    0.2235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9860   -0.3607    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2041   -2.1672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6225   -2.7459    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1919   -0.1481    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3509    1.0163    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9406    0.5911    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  3 15  1  0  0  0  0
  4  5  1  0  0  0  0
  6  9  1  0  0  0  0
  7  8  1  0  0  0  0
  7 12  1  0  0  0  0
  8  9  1  0  0  0  0
  8 13  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 17  1  0  0  0  0
 11 12  1  0  0  0  0
 11 16  1  0  0  0  0
 12 15  1  0  0  0  0
 13 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0336354

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)COC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1/C11H22O6/c1-3-6(2)5-16-11-10(15)9(14)8(13)7(4-12)17-11/h6-15H,3-5H2,1-2H3

> <INCHI_KEY>
DMALNKYCYUUBGC-UHFFFAOYNA-N

> <FORMULA>
C11H22O6

> <MOLECULAR_WEIGHT>
250.291

> <EXACT_MASS>
250.141638428

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
26.307799523095724

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(hydroxymethyl)-6-(2-methylbutoxy)oxane-3,4,5-triol

> <JCHEM_LOGP>
-0.6005408733333332

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.200251469492649

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.210973993814454

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981083411797089

> <JCHEM_POLAR_SURFACE_AREA>
99.38000000000001

> <JCHEM_REFRACTIVITY>
59.0198

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-(hydroxymethyl)-6-(2-methylbutoxy)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  C   UNK     0       0.422   5.126   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.545   3.474   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.545   0.182   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.185   5.126   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -8.155   3.474   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       8.155  -1.864   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0       4.099  -2.158   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.582  -2.555   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.670  -1.467   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.270   0.020   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.788   0.417   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.707  -0.673   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.981  -4.045   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.895  -5.126   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       2.225  -0.276   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       4.388   1.897   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       7.356   1.103   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2   15                                                       
CONECT    4    2    5                                                       
CONECT    5    4                                                            
CONECT    6    9                                                            
CONECT    7    8   12                                                       
CONECT    8    7    9   13                                                  
CONECT    9    6    8   10                                                  
CONECT   10    9   11   17                                                  
CONECT   11   10   12   16                                                  
CONECT   12    7   11   15                                                  
CONECT   13    8   14                                                       
CONECT   14   13                                                            
CONECT   15    3   12                                                       
CONECT   16   11                                                            
CONECT   17   10                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Value	Source
(S)-2-Methyl-1-butanol O-b-D-glucopyranoside	Generator
(S)-2-Methyl-1-butanol O-β-D-glucopyranoside	Generator

Chemical Formula

C₁₁H₂₂O₆

Average Mass

250.2910 Da

Monoisotopic Mass

250.14164 Da

IUPAC Name

2-(hydroxymethyl)-6-(2-methylbutoxy)oxane-3,4,5-triol

Traditional Name

2-(hydroxymethyl)-6-(2-methylbutoxy)oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CCC(C)COC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1/C11H22O6/c1-3-6(2)5-16-11-10(15)9(14)8(13)7(4-12)17-11/h6-15H,3-5H2,1-2H3

InChI Key

DMALNKYCYUUBGC-UHFFFAOYNA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.6	ChemAxon
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	99.38 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	59.02 m³·mol⁻¹	ChemAxon
Polarizability	26.31 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for (S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside (NP0336354)

MOL for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

3D MOL for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

3D SDF for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

3D-SDF for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

PDB for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

3D PDB for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

SMILES for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

INCHI for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

Structure for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)

3D Structure for NP0336354 ((S)-2-Methyl-1-butanol O-beta-D-Glucopyranoside)