NP-MRD: Showing NP-Card for Melongoside P (NP0335947)

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Record Information

Version

2.0

Created at

2024-09-11 03:59:39 UTC

Updated at

2024-09-11 03:59:40 UTC

NP-MRD ID

NP0335947

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Melongoside P

Description

It was first documented in 2022 (PMID: 36051190). Based on a literature review very few articles have been published on Melongoside P.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 05262306312D          

 74 82  0  0  0  0            999 V2000
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    1.9864    1.5080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv2104 05262306312D          

 74 82  0  0  0  0            999 V2000
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 31 32  1  0  0  0  0
 31 37  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 39  1  0  0  0  0
 34 35  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 41  1  0  0  0  0
 39 40  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 43 58  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 45 60  1  0  0  0  0
 46 47  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 56  1  0  0  0  0
 50 51  1  0  0  0  0
 50 62  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 54 62  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 59 64  1  0  0  0  0
 60 61  1  0  0  0  0
 62 63  1  0  0  0  0
 64 65  1  0  0  0  0
 65 66  1  0  0  0  0
 65 70  1  0  0  0  0
 66 67  1  0  0  0  0
 67 68  1  0  0  0  0
 67 72  1  0  0  0  0
 69 70  1  0  0  0  0
 70 71  1  0  0  0  0
 71 72  1  0  0  0  0
 71 74  1  0  0  0  0
 72 73  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0335947

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CCC1(O)OC2CC3C4CCC5CC(CCC5(C)C4CCC3(C)C2C1C)OC1OC(CO)C(O)C(OC2OC(C)C(O)C(O)C2O)C1OC1OC(CO)C(O)C(O)C1O)COC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1/C51H86O23/c1-20(19-66-45-40(62)38(60)34(56)29(16-52)69-45)8-13-51(65)21(2)32-28(74-51)15-27-25-7-6-23-14-24(9-11-49(23,4)26(25)10-12-50(27,32)5)68-48-44(73-47-42(64)39(61)35(57)30(17-53)70-47)43(36(58)31(18-54)71-48)72-46-41(63)37(59)33(55)22(3)67-46/h20-48,52-65H,6-19H2,1-5H3

> <INCHI_KEY>
CEWQEUNTBORADC-UHFFFAOYNA-N

> <FORMULA>
C51H86O23

> <MOLECULAR_WEIGHT>
1067.226

> <EXACT_MASS>
1066.555989029

> <JCHEM_ACCEPTOR_COUNT>
23

> <JCHEM_ATOM_COUNT>
160

> <JCHEM_AVERAGE_POLARIZABILITY>
113.71933217004167

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
14

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[4-(6-hydroxy-16-{[5-hydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-2-yl]oxy}-7,9,13-trimethyl-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-6-yl)-2-methylbutoxy]-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_LOGP>
-1.8652512529999985

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
9

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.962239234836085

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.508065213934355

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6555424437757664

> <JCHEM_POLAR_SURFACE_AREA>
366.29

> <JCHEM_REFRACTIVITY>
251.03550000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
2-[4-(6-hydroxy-16-{[5-hydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-2-yl]oxy}-7,9,13-trimethyl-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-6-yl)-2-methylbutoxy]-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-MAY-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAY-23         0                                  
HETATM    1  C   UNK     0       3.256   4.288   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.708   2.815   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.782   1.583   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.667   0.323   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.738  -0.909   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.283  -0.405   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.064  -1.152   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.386  -0.359   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.357   1.180   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.010   1.927   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.311   1.134   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.499   2.664   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.090  -2.692   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.437  -3.436   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.759  -2.643   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.103  -3.392   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.422  -2.599   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.396  -1.057   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.049  -0.311   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -2.730  -1.106   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.704   0.434   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       5.137   0.772   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       5.166   2.314   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.692   2.125   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.619   3.354   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.145   3.167   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.751   1.750   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.512   3.813   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      10.074   4.396   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      11.604   4.208   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      12.530   5.440   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      14.059   5.250   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      14.986   6.482   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      16.513   6.295   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      17.436   7.524   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0      10.398   7.044   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      11.927   6.859   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      12.853   8.083   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      14.380   7.898   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      15.309   9.128   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0      12.253   9.502   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0      -6.769  -3.343   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -8.091  -2.551   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -8.063  -1.013   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -9.381  -0.218   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -9.356   1.322   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0     -10.675   2.114   0.000  0.00  0.00           O+0
HETATM   48  O   UNK     0      -9.517  -7.916   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      -8.170  -7.169   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -6.851  -7.962   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      -6.880  -9.502   0.000  0.00  0.00           O+0
HETATM   52  O   UNK     0      -2.810  -5.722   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      -4.131  -4.929   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      -5.478  -5.679   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0      -6.797  -4.886   0.000  0.00  0.00           O+0
HETATM   56  C   UNK     0      -8.142  -5.630   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0      -9.464  -4.837   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0      -9.438  -3.300   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0     -10.757  -2.504   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0     -10.729  -0.965   0.000  0.00  0.00           C+0
HETATM   61  O   UNK     0     -12.048  -0.172   0.000  0.00  0.00           O+0
HETATM   62  C   UNK     0      -5.504  -7.216   0.000  0.00  0.00           C+0
HETATM   63  O   UNK     0      -4.183  -8.009   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0     -12.102  -3.251   0.000  0.00  0.00           O+0
HETATM   65  C   UNK     0     -13.420  -2.458   0.000  0.00  0.00           C+0
HETATM   66  O   UNK     0     -13.397  -0.919   0.000  0.00  0.00           O+0
HETATM   67  C   UNK     0     -14.716  -0.126   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0     -14.688   1.414   0.000  0.00  0.00           C+0
HETATM   69  O   UNK     0     -14.796  -4.745   0.000  0.00  0.00           O+0
HETATM   70  C   UNK     0     -14.770  -3.202   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0     -16.089  -2.409   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0     -16.061  -0.872   0.000  0.00  0.00           C+0
HETATM   73  O   UNK     0     -17.380  -0.080   0.000  0.00  0.00           O+0
HETATM   74  O   UNK     0     -17.436  -3.159   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   23                                                  
CONECT    3    2    4   11                                                  
CONECT    4    3    5   22                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    8   13                                                  
CONECT    8    7    9   20                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11    3    6   10   12                                             
CONECT   12   11                                                            
CONECT   13    7   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   42                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20    8   15   19   21                                             
CONECT   21   20                                                            
CONECT   22    4   23                                                       
CONECT   23    2   22   24   28                                             
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   29                                                  
CONECT   27   26                                                            
CONECT   28   23                                                            
CONECT   29   26   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   37                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34   39                                                  
CONECT   34   33   35                                                       
CONECT   35   34                                                            
CONECT   36   37                                                            
CONECT   37   31   36   38                                                  
CONECT   38   37   39   41                                                  
CONECT   39   33   38   40                                                  
CONECT   40   39                                                            
CONECT   41   38                                                            
CONECT   42   17   43                                                       
CONECT   43   42   44   58                                                  
CONECT   44   43   45                                                       
CONECT   45   44   46   60                                                  
CONECT   46   45   47                                                       
CONECT   47   46                                                            
CONECT   48   49                                                            
CONECT   49   48   50   56                                                  
CONECT   50   49   51   62                                                  
CONECT   51   50                                                            
CONECT   52   53                                                            
CONECT   53   52   54                                                       
CONECT   54   53   55   62                                                  
CONECT   55   54   56                                                       
CONECT   56   49   55   57                                                  
CONECT   57   56   58                                                       
CONECT   58   43   57   59                                                  
CONECT   59   58   60   64                                                  
CONECT   60   45   59   61                                                  
CONECT   61   60                                                            
CONECT   62   50   54   63                                                  
CONECT   63   62                                                            
CONECT   64   59   65                                                       
CONECT   65   64   66   70                                                  
CONECT   66   65   67                                                       
CONECT   67   66   68   72                                                  
CONECT   68   67                                                            
CONECT   69   70                                                            
CONECT   70   65   69   71                                                  
CONECT   71   70   72   74                                                  
CONECT   72   67   71   73                                                  
CONECT   73   72                                                            
CONECT   74   71                                                            
MASTER        0    0    0    0    0    0    0    0   74    0  164    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₅₁H₈₆O₂₃

Average Mass

1067.2260 Da

Monoisotopic Mass

1066.55599 Da

IUPAC Name

2-[4-(6-hydroxy-16-{[5-hydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-[(3,4,5-trihydroxy-6-methyloxan-2-yl)oxy]oxan-2-yl]oxy}-7,9,13-trimethyl-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-6-yl)-2-methylbutoxy]-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(CCC1(O)OC2CC3C4CCC5CC(CCC5(C)C4CCC3(C)C2C1C)OC1OC(CO)C(O)C(OC2OC(C)C(O)C(O)C2O)C1OC1OC(CO)C(O)C(O)C1O)COC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1/C51H86O23/c1-20(19-66-45-40(62)38(60)34(56)29(16-52)69-45)8-13-51(65)21(2)32-28(74-51)15-27-25-7-6-23-14-24(9-11-49(23,4)26(25)10-12-50(27,32)5)68-48-44(73-47-42(64)39(61)35(57)30(17-53)70-47)43(36(58)31(18-54)71-48)72-46-41(63)37(59)33(55)22(3)67-46/h20-48,52-65H,6-19H2,1-5H3

InChI Key

CEWQEUNTBORADC-UHFFFAOYNA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.9	ChemAxon
pKa (Strongest Acidic)	11.51	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	23	ChemAxon
Hydrogen Donor Count	14	ChemAxon
Polar Surface Area	366.29 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	251.04 m³·mol⁻¹	ChemAxon
Polarizability	113.72 Å³	ChemAxon
Number of Rings	9	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Biswas P, Hany Rumi O, Ahmed Khan D, Ahmed MN, Nahar N, Jahan R, Hasan Zilani MN, Paul TK, Hasan A, Bondhon TA, Jannat K, Hasan MN, Rahmatullah M: Evaluation of Melongosides as Potential Inhibitors of NS2B-NS3 Activator-Protease of Dengue Virus (Serotype 2) by Using Molecular Docking and Dynamics Simulation Approach. J Trop Med. 2022 Aug 23;2022:7111786. doi: 10.1155/2022/7111786. eCollection 2022. [PubMed:36051190 ]

Showing NP-Card for Melongoside P (NP0335947)

MOL for NP0335947 (Melongoside P)

3D MOL for NP0335947 (Melongoside P)

3D SDF for NP0335947 (Melongoside P)

3D-SDF for NP0335947 (Melongoside P)

PDB for NP0335947 (Melongoside P)

3D PDB for NP0335947 (Melongoside P)

SMILES for NP0335947 (Melongoside P)

INCHI for NP0335947 (Melongoside P)

Structure for NP0335947 (Melongoside P)

3D Structure for NP0335947 (Melongoside P)