Np mrd loader

Record Information
Version2.0
Created at2024-09-10 19:55:51 UTC
Updated at2024-09-10 19:55:52 UTC
NP-MRD IDNP0334780
Secondary Accession NumbersNone
Natural Product Identification
Common NameCeramide (t18:0/16:0)
DescriptionCer(t18:0/16:0), Also known as ceramide, belongs to the class of organic compounds known as phytoceramides. These are n-acylated 4-hydroxysphinganine. Ceramide (t18:0/16:0) was first documented in 1997 (PMID: 9034165). Cer(t18:0/16:0) Is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
Ceramide (t18:0/16:0)HMDB
CeramideHMDB
N-(Hexadecanoyl)-4R-hydroxy-sphinganineHMDB
Ceramide(t18:0/16:0)HMDB
N-(Hexadecanoyl)-4R-hydroxy-dihydrosphingosineHMDB
N-(Hexadecanoyl)-4R-hydroxy-D-erythro-sphinganineHMDB
N-[(2S,3S)-1,3,4-Trihydroxyoctadecan-2-yl]hexadecanimidateHMDB
Chemical FormulaC34H69NO4
Average Mass555.9160 Da
Monoisotopic Mass555.52266 Da
IUPAC NameN-[(2S,3S)-1,3,4-trihydroxyoctadecan-2-yl]hexadecanamide
Traditional NameN-[(2S,3S)-1,3,4-trihydroxyoctadecan-2-yl]hexadecanamide
CAS Registry NumberNot Available
SMILES
[H][C@@](O)(C(O)CCCCCCCCCCCCCC)[C@]([H])(CO)NC(=O)CCCCCCCCCCCCCCC
InChI Identifier
InChI=1S/C34H69NO4/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-33(38)35-31(30-36)34(39)32(37)28-26-24-22-20-18-16-14-12-10-8-6-4-2/h31-32,34,36-37,39H,3-30H2,1-2H3,(H,35,38)/t31-,32?,34-/m0/s1
InChI KeyIVBULNXGVIHEKN-AUOMWKRBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phytoceramides. These are n-acylated 4-hydroxysphinganine.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSphingolipids
Sub ClassCeramides
Direct ParentPhytoceramides
Alternative Parents
Substituents
  • N-acyl-4-hydroxysphinganine
  • Fatty amide
  • N-acyl-amine
  • Fatty acyl
  • Carboxamide group
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Carboxylic acid derivative
  • Polyol
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Organopnictogen compound
  • Organic oxygen compound
  • Alcohol
  • Organic nitrogen compound
  • Carbonyl group
  • Primary alcohol
  • Hydrocarbon derivative
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP8.76ALOGPS
logP10ChemAxon
logS-6.6ALOGPS
pKa (Strongest Acidic)13.26ChemAxon
pKa (Strongest Basic)-1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area89.79 ŲChemAxon
Rotatable Bond Count31ChemAxon
Refractivity166.17 m³·mol⁻¹ChemAxon
Polarizability74.93 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0010697
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB027847
KNApSAcK IDNot Available
Chemspider ID24765759
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53480650
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ghosh S, Strum JC, Bell RM: Lipid biochemistry: functions of glycerolipids and sphingolipids in cellular signaling. FASEB J. 1997 Jan;11(1):45-50. [PubMed:9034165 ]