Np mrd loader

Record Information
Version2.0
Created at2024-09-09 21:37:47 UTC
Updated at2024-10-11 21:59:17 UTC
NP-MRD IDNP0334004
Secondary Accession NumbersNone
Natural Product Identification
Common NamePediocin AcH
DescriptionIsolated from Pediococcus acidilacici PAC-10 and 43200
Structure
Thumb
SynonymsNot Available
Chemical FormulaC196H297N61O60S5
Average Mass4628.2000 Da
Monoisotopic Mass4625.06678 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
[H]C(C)(O)C([H])(\N=C(/O)C([H])(C)\N=C(/O)C([H])(CC1=CNC2=CC=CC=C12)\N=C(/O)C([H])(C)\N=C(/O)C([H])(CCSC)\N=C(/O)C([H])(C)\N=C(/O)C\N=C(/O)C([H])(CC(O)=N)\N=C(/O)C([H])(CC(O)=N)\N=C(/O)C([H])(\N=C(/O)C([H])(\N=C(/O)C([H])(CS)\N=C(\O)C([H])(\N=C(/O)C([H])(\N=C(/O)C([H])(C)\N=C(\O)C([H])(CCCCN)\N=C(/O)C\N=C(/O)C([H])(CC1=CNC2=CC=CC=C12)\N=C(/O)C([H])(CC(O)=O)\N=C(/O)C([H])(\N=C(/O)C([H])(CO)\N=C(/O)C([H])(CS)\N=C(/O)C([H])(CO)\N=C(/O)C([H])(CC1([H])C=NC=N1)\N=C(/O)C([H])(CCCCN)\N=C(/O)C\N=C(/O)C([H])(CS)\N=C(/O)C([H])(\N=C(/O)C([H])(\N=C(/O)C\N=C(/O)C([H])(CC(O)=N)\N=C(/O)C\N=C(/O)C([H])(CC1=CC=C(O)C=C1)\N=C(/O)C([H])(CC1=CC=C(O)C=C1)\N=C(/O)C([H])(N)CCCCN)C(C)C)C([H])(C)O)C(C)C)C([H])(C)O)C([H])(C)O)C([H])(C)CC)C([H])(C)CC)C(\O)=N\C\C(O)=N\C\C(O)=N\C([H])(CC1([H])C=NC=N1)C(\O)=N\C([H])(CCC(O)=N)C(\O)=N\C\C(O)=N\C([H])(CC(O)=N)C(=O)OC(=O)C([H])(CS)\N=C(/O)C([H])(CCCCN)\N=C(/O)C([H])(N)CC1([H])C=NC=N1
InChI Identifier
InChI=1S/C196H297N61O60S5/c1-18-92(7)155(190(310)242-130(65-142(206)269)181(301)241-129(64-141(205)268)171(291)215-75-145(272)224-94(9)161(281)233-121(50-55-322-17)174(294)225-95(10)162(282)236-125(59-105-69-212-116-36-23-21-33-112(105)116)177(297)227-97(12)163(283)254-157(98(13)260)187(307)220-73-144(271)213-74-146(273)230-126(61-107-71-209-88-222-107)179(299)235-120(48-49-139(203)266)167(287)214-79-150(277)232-132(66-143(207)270)195(315)317-196(316)138(86-321)249-176(296)119(39-27-31-54-200)234-166(286)114(202)60-106-70-208-87-221-106)253-191(311)156(93(8)19-2)252-186(306)137(85-320)248-193(313)159(100(15)262)257-194(314)160(101(16)263)255-164(284)96(11)226-173(293)117(37-25-29-52-198)228-147(274)76-217-169(289)124(58-104-68-211-115-35-22-20-32-111(104)115)239-182(302)131(67-152(279)280)243-188(308)154(91(5)6)251-184(304)134(82-259)245-185(305)136(84-319)246-183(303)133(81-258)244-180(300)127(62-108-72-210-89-223-108)240-175(295)118(38-26-30-53-199)229-148(275)77-219-172(292)135(83-318)247-192(312)158(99(14)261)256-189(309)153(90(3)4)250-151(278)80-218-170(290)128(63-140(204)267)231-149(276)78-216-168(288)122(56-102-40-44-109(264)45-41-102)238-178(298)123(57-103-42-46-110(265)47-43-103)237-165(285)113(201)34-24-28-51-197/h20-23,32-33,35-36,40-47,68-72,87-101,106-108,113-114,117-138,153-160,211-212,258-265,318-321H,18-19,24-31,34,37-39,48-67,73-86,197-202H2,1-17H3,(H2,203,266)(H2,204,267)(H2,205,268)(H2,206,269)(H2,207,270)(H,213,271)(H,214,287)(H,215,291)(H,216,288)(H,217,289)(H,218,290)(H,219,292)(H,220,307)(H,224,272)(H,225,294)(H,226,293)(H,227,297)(H,228,274)(H,229,275)(H,230,273)(H,231,276)(H,232,277)(H,233,281)(H,234,286)(H,235,299)(H,236,282)(H,237,285)(H,238,298)(H,239,302)(H,240,295)(H,241,301)(H,242,310)(H,243,308)(H,244,300)(H,245,305)(H,246,303)(H,247,312)(H,248,313)(H,249,296)(H,250,278)(H,251,304)(H,252,306)(H,253,311)(H,254,283)(H,255,284)(H,256,309)(H,257,314)(H,279,280)
InChI KeyFLTWKHKMXZLDNR-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.77ChemAxon
pKa (Strongest Acidic)2.38ChemAxon
Physiological Charge3ChemAxon
Hydrogen Acceptor Count118ChemAxon
Hydrogen Donor Count73ChemAxon
Polar Surface Area2093.55 ŲChemAxon
Rotatable Bond Count150ChemAxon
Refractivity1220.39 m³·mol⁻¹ChemAxon
Polarizability480.31 ųChemAxon
Number of Rings9ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Vermeulen R, Deane S, Dicks L, Rohwer J, van Staden ADP: Manganese Privation-Induced Transcriptional Upregulation of the Class IIa Bacteriocin Plantaricin 423 in Lactobacillus plantarum Strain 423. Appl Environ Microbiol. 2021 Oct 14;87(21):e0097621. doi: 10.1128/AEM.00976-21. Epub 2021 Aug 18. [PubMed:34406833 ]
  2. Barbosa J, Albano H, Silva B, Almeida MH, Nogueira T, Teixeira P: Characterization of a Lactiplantibacillus plantarum R23 Isolated from Arugula by Whole-Genome Sequencing and Its Bacteriocin Production Ability. Int J Environ Res Public Health. 2021 May 21;18(11):5515. doi: 10.3390/ijerph18115515. [PubMed:34063896 ]
  3. Jin J, Jie L, Zhang H, Xie Y, Liu H, Gao X, Zhang H: Pediocin AcH Is Transcriptionally Regulated by a Two-Component System in Lactobacillus plantarum subsp. plantarum. J Food Prot. 2020 Oct 1;83(10):1693-1700. doi: 10.4315/JFP-19-587. [PubMed:32421790 ]
  4. Wan X, Usvalampi AM, Saris PE, Takala TM: A counterselection method for Lactococcus lactis genome editing based on class IIa bacteriocin sensitivity. Appl Microbiol Biotechnol. 2016 Nov;100(22):9661-9669. doi: 10.1007/s00253-016-7828-6. Epub 2016 Sep 22. [PubMed:27654656 ]
  5. Wang Y, Ametaj BN, Ambrose DJ, Ganzle MG: Characterisation of the bacterial microbiota of the vagina of dairy cows and isolation of pediocin-producing Pediococcus acidilactici. BMC Microbiol. 2013 Jan 29;13:19. doi: 10.1186/1471-2180-13-19. [PubMed:23356904 ]
  6. Li R, Takala TM, Qiao M, Xu H, Saris PE: Nisin-selectable food-grade secretion vector for Lactococcus lactis. Biotechnol Lett. 2011 Apr;33(4):797-803. doi: 10.1007/s10529-010-0503-6. Epub 2010 Dec 24. [PubMed:21184135 ]
  7. Mathys S, von Ah U, Lacroix C, Staub E, Mini R, Cereghetti T, Meile L: Detection of the pediocin gene pedA in strains from human faeces by real-time PCR and characterization of Pediococcus acidilactici UVA1. BMC Biotechnol. 2007 Sep 12;7:55. doi: 10.1186/1472-6750-7-55. [PubMed:17850651 ]
  8. Van Reenen CA, Van Zyl WH, Dicks LM: Expression of the immunity protein of plantaricin 423, produced by Lactobacillus plantarum 423, and analysis of the plasmid encoding the bacteriocin. Appl Environ Microbiol. 2006 Dec;72(12):7644-51. doi: 10.1128/AEM.01428-06. Epub 2006 Oct 20. [PubMed:17056693 ]
  9. Bernbom N, Licht TR, Saadbye P, Vogensen FK, Norrung B: Lactobacillus plantarum inhibits growth of Listeria monocytogenes in an in vitro continuous flow gut model, but promotes invasion of L. monocytogenes in the gut of gnotobiotic rats. Int J Food Microbiol. 2006 Apr 15;108(1):10-4. doi: 10.1016/j.ijfoodmicro.2005.10.021. Epub 2006 Jan 10. [PubMed:16376449 ]
  10. Xue J, Hunter I, Steinmetz T, Peters A, Ray B, Miller KW: Novel activator of mannose-specific phosphotransferase system permease expression in Listeria innocua, identified by screening for pediocin AcH resistance. Appl Environ Microbiol. 2005 Mar;71(3):1283-90. doi: 10.1128/AEM.71.3.1283-1290.2005. [PubMed:15746330 ]