Np mrd loader

Record Information
Version2.0
Created at2024-05-12 09:13:23 UTC
Updated at2024-09-03 04:21:32 UTC
NP-MRD IDNP0333196
Natural Product DOIhttps://doi.org/10.57994/2521
Secondary Accession NumbersNone
Natural Product Identification
Common NameTufnelactone E
DescriptionTufnelactone E belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety. Tufnelactone E was first documented in 2022 (PMID: 35704432). Based on a literature review very few articles have been published on Tufnelactone E.
Structure
Thumb
Synonyms
ValueSource
(2R)-2-({[(3R,3ar,4S,11ar)-10-(hydroxymethyl)-4-{[2-(hydroxymethyl)prop-2-enoyl]oxy}-6-methyl-2-oxo-3H,3ah,4H,5H,8H,9H,11ah-cyclodeca[b]furan-3-yl]methyl}amino)-4-methylpentanoateGenerator
Chemical FormulaC25H37NO8
Average Mass479.5700 Da
Monoisotopic Mass479.25192 Da
IUPAC Name(2R)-2-({[(3R,3aR,4S,11aR)-10-(hydroxymethyl)-4-{[2-(hydroxymethyl)prop-2-enoyl]oxy}-6-methyl-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-3-yl]methyl}amino)-4-methylpentanoic acid
Traditional Name(2R)-2-({[(3R,3aR,4S,11aR)-10-(hydroxymethyl)-4-{[2-(hydroxymethyl)prop-2-enoyl]oxy}-6-methyl-2-oxo-3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-3-yl]methyl}amino)-4-methylpentanoic acid
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CN[C@H](CC(C)C)C(O)=O)C(=O)O[C@@H]2\C=C(CO)\CC\C=C(C)\C[C@H](OC(=O)C(=C)CO)[C@@]12[H]
InChI Identifier
InChI=1S/C25H37NO8/c1-14(2)8-19(23(29)30)26-11-18-22-20(33-24(31)16(4)12-27)9-15(3)6-5-7-17(13-28)10-21(22)34-25(18)32/h6,10,14,18-22,26-28H,4-5,7-9,11-13H2,1-3H3,(H,29,30)/b15-6+,17-10-/t18-,19+,20-,21+,22+/m0/s1
InChI KeyYBVVGCNYHPPUHH-QJPKEHJTSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
NOESY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)opatz@uni-mainz.deNot AvailableNot Available2024-05-12View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)opatz@uni-mainz.deNot AvailableNot Available2024-05-12View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)opatz@uni-mainz.deNot AvailableNot Available2024-05-12View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, CD3OD, experimental)opatz@uni-mainz.deNot AvailableNot Available2024-05-12View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, CD3OD, experimental)opatz@uni-mainz.deNot AvailableNot Available2024-05-12View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CD3OD, experimental)opatz@uni-mainz.deNot AvailableNot Available2024-05-12View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Vernonia tufnelliae
      Not Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene lactones
Direct ParentGermacranolides and derivatives
Alternative Parents
Substituents
  • Germacranolide
  • Farsesane sesquiterpenoid
  • Sesquiterpenoid
  • Germacrane sesquiterpenoid
  • Leucine or derivatives
  • Alpha-amino acid or derivatives
  • Tricarboxylic acid or derivatives
  • Fatty acid ester
  • Beta-hydroxy acid
  • Fatty acyl
  • Hydroxy acid
  • Gamma butyrolactone
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Tetrahydrofuran
  • Amino acid
  • Lactone
  • Carboxylic acid ester
  • Amino acid or derivatives
  • Oxacycle
  • Organoheterocyclic compound
  • Secondary amine
  • Secondary aliphatic amine
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.53ChemAxon
pKa (Strongest Acidic)1.46ChemAxon
pKa (Strongest Basic)10.23ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area142.39 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity125.88 m³·mol⁻¹ChemAxon
Polarizability51.03 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound168287946
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Bitchagno GTM, Schuffler A, Gross J, Krumb M, Tane P, Opatz T: Sesquiterpene Lactones from Vernonia tufnelliae: Structural Characterization and Biological Evaluation. J Nat Prod. 2022 Jul 22;85(7):1681-1690. doi: 10.1021/acs.jnatprod.2c00055. Epub 2022 Jun 15. [PubMed:35704432 ]
  2. DOI: 10.1021/acs.jnatprod.2c00055