NP-MRD: Showing NP-Card for ajucampylanoid R (NP0333083)

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Record Information

Version

2.0

Created at

2024-05-08 21:48:27 UTC

Updated at

2024-09-03 04:21:09 UTC

NP-MRD ID

NP0333083

Natural Product DOI

https://doi.org/10.57994/2382

Secondary Accession Numbers

None

Natural Product Identification

Common Name

ajucampylanoid R

Description

Ajucampylanoid R belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations. ajucampylanoid R was first documented in 2023 (PMID: 37566645). Based on a literature review very few articles have been published on ajucampylanoid R.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01212300252D          

 29 31  0  0  1  0            999 V2000
    0.8986   -2.2820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9592   -2.2820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6771   -3.0572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2074   -3.6892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0304   -3.6317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3394   -4.3966    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1399   -4.5962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3673   -5.3892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1678   -5.5888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7074   -4.9269    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0078   -4.4897    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2429   -4.7988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1280   -5.6157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3631   -5.9248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  7 11  1  0  0  0  0
 12 11  1  0  0  0  0
 12  5  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  2 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 19 18  1  0  0  0  0
 19 20  1  6  0  0  0
 21 19  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 27 26  1  0  0  0  0
 27 21  1  0  0  0  0
  2 27  1  0  0  0  0
 27 28  1  1  0  0  0
 23 29  2  0  0  0  0
M  END


  Mrv2104 01212300252D          

 29 31  0  0  1  0            999 V2000
    0.8986   -2.2820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9592   -2.2820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6771   -3.0572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2074   -3.6892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0304   -3.6317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3394   -4.3966    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1399   -4.5962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3673   -5.3892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1678   -5.5888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7074   -4.9269    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0078   -4.4897    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2429   -4.7988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1280   -5.6157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3631   -5.9248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -2.0625    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  7 11  1  0  0  0  0
 12 11  1  0  0  0  0
 12  5  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  2 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 19 18  1  0  0  0  0
 19 20  1  6  0  0  0
 21 19  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 27 26  1  0  0  0  0
 27 21  1  0  0  0  0
  2 27  1  0  0  0  0
 27 28  1  1  0  0  0
 23 29  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0333083

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]12CCCC(=C)[C@]1(C)[C@@H](O)C[C@@H](C)[C@]2(C)CCC1=C[C@@H](OCC)O[C@H]1OCC

> <INCHI_IDENTIFIER>
InChI=1S/C24H40O4/c1-7-26-21-15-18(22(28-21)27-8-2)12-13-23(5)17(4)14-20(25)24(6)16(3)10-9-11-19(23)24/h15,17,19-22,25H,3,7-14H2,1-2,4-6H3/t17-,19-,20+,21+,22-,23+,24+/m1/s1

> <INCHI_KEY>
YFWZMTHNMBVPTC-WGNNLXJVSA-N

> <FORMULA>
C24H40O4

> <MOLECULAR_WEIGHT>
392.58

> <EXACT_MASS>
392.292659768

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
46.69090524438102

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,3R,4S,4aR,8aR)-4-{2-[(2R,5S)-2,5-diethoxy-2,5-dihydrofuran-3-yl]ethyl}-3,4,8a-trimethyl-8-methylidene-decahydronaphthalen-1-ol

> <JCHEM_LOGP>
5.080852828333333

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.4672942033665643

> <JCHEM_POLAR_SURFACE_AREA>
47.92

> <JCHEM_REFRACTIVITY>
112.89330000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,3R,4S,4aR,8aR)-4-{2-[(2R,5S)-2,5-diethoxy-2,5-dihydrofuran-3-yl]ethyl}-3,4,8a-trimethyl-8-methylidene-hexahydro-1H-naphthalen-1-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 21-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-JAN-23         0                                  
HETATM    1  C   UNK     0       1.677  -4.260   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.657  -4.260   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.131  -5.707   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.120  -6.887   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.657  -6.779   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.234  -8.207   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       7.728  -8.580   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.152 -10.060   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.647 -10.432   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.054  -9.197   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.748  -8.381   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.320  -8.958   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       2.106 -10.483   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.678 -11.060   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.001   0.770   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   28  H   UNK     0       4.001  -3.850   0.000  0.00  0.00           H+0
HETATM   29  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   16   27                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   12                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   11                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    7   12                                                       
CONECT   12   11    5   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16    2   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23   27                                             
CONECT   22   21                                                            
CONECT   23   21   24   29                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   21    2   28                                             
CONECT   28   27                                                            
CONECT   29   23                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₄₀O₄

Average Mass

392.5800 Da

Monoisotopic Mass

392.29266 Da

IUPAC Name

(1S,3R,4S,4aR,8aR)-4-{2-[(2R,5S)-2,5-diethoxy-2,5-dihydrofuran-3-yl]ethyl}-3,4,8a-trimethyl-8-methylidene-decahydronaphthalen-1-ol

Traditional Name

(1S,3R,4S,4aR,8aR)-4-{2-[(2R,5S)-2,5-diethoxy-2,5-dihydrofuran-3-yl]ethyl}-3,4,8a-trimethyl-8-methylidene-hexahydro-1H-naphthalen-1-ol

CAS Registry Number

Not Available

SMILES

[H][C@]12CCCC(=C)[C@]1(C)[C@@H](O)C[C@@H](C)[C@]2(C)CCC1=C[C@@H](OCC)O[C@H]1OCC

InChI Identifier

InChI=1S/C24H40O4/c1-7-26-21-15-18(22(28-21)27-8-2)12-13-23(5)17(4)14-20(25)24(6)16(3)10-9-11-19(23)24/h15,17,19-22,25H,3,7-14H2,1-2,4-6H3/t17-,19-,20+,21+,22-,23+,24+/m1/s1

InChI Key

YFWZMTHNMBVPTC-WGNNLXJVSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	pengsh56@mail2.sysu.edu.cn	Not Available	Not Available	2024-05-08	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	pengsh56@mail2.sysu.edu.cn	Not Available	Not Available	2024-05-08	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	pengsh56@mail2.sysu.edu.cn	Not Available	Not Available	2024-05-08	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	pengsh56@mail2.sysu.edu.cn	Not Available	Not Available	2024-05-08	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	pengsh56@mail2.sysu.edu.cn	Not Available	Not Available	2024-05-08	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	pengsh56@mail2.sysu.edu.cn	Not Available	Not Available	2024-05-08	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ajuga campylantha		Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Colensane and clerodane diterpenoids

Alternative Parents

Substituents

Clerodane diterpenoid
Dihydrofuran
Cyclic alcohol
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.08	ChemAxon
pKa (Strongest Basic)	-0.47	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	47.92 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	112.89 m³·mol⁻¹	ChemAxon
Polarizability	46.69 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Peng X, Tan Q, Zhang Z, Wu D, Xu J, Zhou H, Gu Q: Discovery of neo-Clerodane Diterpenoids from Ajuga campylantha as Neuroprotective Agents against Ferroptosis and Neuroinflammation. J Nat Prod. 2023 Aug 25;86(8):2006-2021. doi: 10.1021/acs.jnatprod.3c00447. Epub 2023 Aug 11. [PubMed:37566645 ]
DOI: 10.1021/acs.jnatprod.3c00447

Showing NP-Card for ajucampylanoid R (NP0333083)

MOL for NP0333083 (ajucampylanoid R)

3D MOL for NP0333083 (ajucampylanoid R)

3D SDF for NP0333083 (ajucampylanoid R)

3D-SDF for NP0333083 (ajucampylanoid R)

PDB for NP0333083 (ajucampylanoid R)

3D PDB for NP0333083 (ajucampylanoid R)

SMILES for NP0333083 (ajucampylanoid R)

INCHI for NP0333083 (ajucampylanoid R)

Structure for NP0333083 (ajucampylanoid R)

3D Structure for NP0333083 (ajucampylanoid R)