NP-MRD: Showing NP-Card for picrachinentin A (NP0333027)

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Record Information

Version

2.0

Created at

2024-05-03 10:45:10 UTC

Updated at

2025-12-20 09:41:07 UTC

NP-MRD ID

NP0333027

Natural Product DOI

https://doi.org/10.57994/2320

Secondary Accession Numbers

None

Natural Product Identification

Common Name

picrachinentin A

Description

Picrachinentin A belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues. Based on a literature review very few articles have been published on picrachinentin A.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01152313212D          

 50 53  0  0  1  0            999 V2000
    6.7804   -5.3755    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7804   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0659   -6.6130    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3514   -6.2005    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6370   -6.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9225   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2080   -6.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4935   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7791   -6.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0646   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1520   -7.2804    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0659   -7.4380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3514   -7.8505    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3514   -8.6755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6370   -9.0880    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9225   -8.6755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9225   -7.8505    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6370   -7.4380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4948   -6.6130    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7498   -7.3976    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5871   -7.3207    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.3895   -7.5923    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8962   -8.2968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1276   -8.6211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9762   -9.4301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5658  -10.0039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3393   -9.6767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5192   -8.8676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6838   -6.5014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0226   -6.0080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1192   -5.1887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8771   -4.8628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5383   -5.3561    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4417   -6.1754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0334   -7.8238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704   -8.5154    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.4486   -9.3394    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.7106  -10.1542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3349  -10.7575    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1768  -10.9592    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.9724  -10.6357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2390  -11.7819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9826  -12.1393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5577  -12.2471    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0103  -10.5903    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6263   -9.4072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2739  -10.1531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7436  -10.8313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4517  -10.2208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4658   -7.2252    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  5 11  2  0  0  0  0
  3 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
  2 19  1  0  0  0  0
 20 19  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
 21 29  1  6  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 29 34  1  0  0  0  0
 20 35  1  0  0  0  0
 35 36  1  0  0  0  0
 37 36  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 40 39  1  0  0  0  0
 40 41  1  0  0  0  0
 26 41  1  0  0  0  0
 40 42  1  1  0  0  0
 42 43  1  0  0  0  0
 42 44  2  0  0  0  0
 38 45  2  0  0  0  0
 37 46  1  6  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 47 49  1  0  0  0  0
 35 50  2  0  0  0  0
M  END


  Mrv2104 01152313212D          

 50 53  0  0  1  0            999 V2000
    6.7804   -5.3755    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7804   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0659   -6.6130    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3514   -6.2005    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6370   -6.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9225   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2080   -6.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4935   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7791   -6.6130    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0646   -6.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1520   -7.2804    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0659   -7.4380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3514   -7.8505    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3514   -8.6755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6370   -9.0880    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9225   -8.6755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9225   -7.8505    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6370   -7.4380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4948   -6.6130    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.7498   -7.3976    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5871   -7.3207    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.3895   -7.5923    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.8962   -8.2968    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1276   -8.6211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9762   -9.4301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5658  -10.0039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3393   -9.6767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5192   -8.8676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6838   -6.5014    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0226   -6.0080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1192   -5.1887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8771   -4.8628    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5383   -5.3561    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4417   -6.1754    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0334   -7.8238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704   -8.5154    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.4486   -9.3394    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.7106  -10.1542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3349  -10.7575    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1768  -10.9592    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.9724  -10.6357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2390  -11.7819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9826  -12.1393    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5577  -12.2471    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0103  -10.5903    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6263   -9.4072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2739  -10.1531    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7436  -10.8313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4517  -10.2208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4658   -7.2252    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  5 11  2  0  0  0  0
  3 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
  2 19  1  0  0  0  0
 20 19  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
 21 29  1  6  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 29 34  1  0  0  0  0
 20 35  1  0  0  0  0
 35 36  1  0  0  0  0
 37 36  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 40 39  1  0  0  0  0
 40 41  1  0  0  0  0
 26 41  1  0  0  0  0
 40 42  1  1  0  0  0
 42 43  1  0  0  0  0
 42 44  2  0  0  0  0
 38 45  2  0  0  0  0
 37 46  1  6  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 47 49  1  0  0  0  0
 35 50  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0333027

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(=O)N[C@@H](CC1=CC=CC=C1)C(=O)N[C@H]1[C@@H](OC2=CC=C(C[C@H](NC(=O)[C@H](CC(C)C)NC1=O)C(O)=O)C=C2)C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C39H48N4O7/c1-4-5-8-17-33(44)40-31(23-26-13-9-6-10-14-26)37(46)43-34-35(28-15-11-7-12-16-28)50-29-20-18-27(19-21-29)24-32(39(48)49)42-36(45)30(22-25(2)3)41-38(34)47/h6-7,9-16,18-21,25,30-32,34-35H,4-5,8,17,22-24H2,1-3H3,(H,40,44)(H,41,47)(H,42,45)(H,43,46)(H,48,49)/t30-,31-,32-,34-,35-/m0/s1

> <INCHI_KEY>
DKHYYRYDIOIDJK-SEVYIBDJSA-N

> <FORMULA>
C39H48N4O7

> <MOLECULAR_WEIGHT>
684.834

> <EXACT_MASS>
684.352299902

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
98

> <JCHEM_AVERAGE_POLARIZABILITY>
73.82617207620758

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,4S,7S,10S)-4-[(2S)-2-hexanamido-3-phenylpropanamido]-7-(2-methylpropyl)-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carboxylic acid

> <JCHEM_LOGP>
5.329819053666667

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.034278450679182

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.714225174333171

> <JCHEM_PKA_STRONGEST_BASIC>
-1.5244026405691007

> <JCHEM_POLAR_SURFACE_AREA>
162.93

> <JCHEM_REFRACTIVITY>
187.20320000000012

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S,7S,10S)-4-[(2S)-2-hexanamido-3-phenylpropanamido]-7-(2-methylpropyl)-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-JAN-23         0                                  
HETATM    1  O   UNK     0      12.657 -10.034   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      12.657 -11.574   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.323 -12.344   0.000  0.00  0.00           C+0
HETATM    4  N   UNK     0       9.989 -11.574   0.000  0.00  0.00           N+0
HETATM    5  C   UNK     0       8.656 -12.344   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.322 -11.574   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.988 -12.344   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.655 -11.574   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.321 -12.344   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.987 -11.574   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       7.750 -13.590   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      11.323 -13.884   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.989 -14.654   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.989 -16.194   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.656 -16.964   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.322 -16.194   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.322 -14.654   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.656 -13.884   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0      13.990 -12.344   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0      14.466 -13.809   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      16.029 -13.665   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      17.527 -14.172   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      18.473 -15.487   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      17.038 -16.093   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      16.756 -17.603   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      17.856 -18.674   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      19.300 -18.063   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      19.636 -16.553   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      16.210 -12.136   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      14.975 -11.215   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      15.156  -9.686   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      16.571  -9.077   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      17.805  -9.998   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      17.624 -11.527   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      13.129 -14.605   0.000  0.00  0.00           C+0
HETATM   36  N   UNK     0      12.265 -15.895   0.000  0.00  0.00           N+0
HETATM   37  C   UNK     0      12.037 -17.434   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      12.526 -18.955   0.000  0.00  0.00           C+0
HETATM   39  N   UNK     0      13.692 -20.081   0.000  0.00  0.00           N+0
HETATM   40  C   UNK     0      15.263 -20.457   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      16.749 -19.853   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      15.380 -21.993   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      16.767 -22.660   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0      14.108 -22.861   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0      11.219 -19.769   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      10.503 -17.560   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       9.845 -18.952   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      10.721 -20.218   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0       8.310 -19.079   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      12.070 -13.487   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   19                                                  
CONECT    3    2    4   12                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   11                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    5                                                            
CONECT   12    3   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13                                                       
CONECT   19    2   20                                                       
CONECT   20   19   21   35                                                  
CONECT   21   20   22   29                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   28                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   41                                                  
CONECT   27   26   28                                                       
CONECT   28   27   23                                                       
CONECT   29   21   30   34                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   29                                                       
CONECT   35   20   36   50                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38   46                                                  
CONECT   38   37   39   45                                                  
CONECT   39   38   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40   26                                                       
CONECT   42   40   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42                                                            
CONECT   45   38                                                            
CONECT   46   37   47                                                       
CONECT   47   46   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47                                                            
CONECT   50   35                                                            
MASTER        0    0    0    0    0    0    0    0   50    0  106    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₉H₄₈N₄O₇

Average Mass

684.8340 Da

Monoisotopic Mass

684.35230 Da

IUPAC Name

(3S,4S,7S,10S)-4-[(2S)-2-hexanamido-3-phenylpropanamido]-7-(2-methylpropyl)-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carboxylic acid

Traditional Name

(3S,4S,7S,10S)-4-[(2S)-2-hexanamido-3-phenylpropanamido]-7-(2-methylpropyl)-5,8-dioxo-3-phenyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),12,15-triene-10-carboxylic acid

CAS Registry Number

Not Available

SMILES

CCCCCC(=O)N[C@@H](CC1=CC=CC=C1)C(=O)N[C@H]1[C@@H](OC2=CC=C(C[C@H](NC(=O)[C@H](CC(C)C)NC1=O)C(O)=O)C=C2)C1=CC=CC=C1

InChI Identifier

InChI=1S/C39H48N4O7/c1-4-5-8-17-33(44)40-31(23-26-13-9-6-10-14-26)37(46)43-34-35(28-15-11-7-12-16-28)50-29-20-18-27(19-21-29)24-32(39(48)49)42-36(45)30(22-25(2)3)41-38(34)47/h6-7,9-16,18-21,25,30-32,34-35H,4-5,8,17,22-24H2,1-3H3,(H,40,44)(H,41,47)(H,42,45)(H,43,46)(H,48,49)/t30-,31-,32-,34-,35-/m0/s1

InChI Key

DKHYYRYDIOIDJK-SEVYIBDJSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)	515195267@qq.com	Not Available	Jiaqi Song	2024-05-03	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)	515195267@qq.com	Not Available	Jiaqi Song	2024-05-03	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)	515195267@qq.com	Not Available	Jiaqi Song	2024-05-03	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 151 MHz, C5D5N, experimental)	515195267@qq.com	Not Available	Jiaqi Song	2024-05-03	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)	515195267@qq.com	Not Available	Jiaqi Song	2024-05-03	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C5D5N, experimental)	515195267@qq.com	Not Available	Jiaqi Song	2024-05-03	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C5D5N, experimental)	515195267@qq.com	Not Available	Jiaqi Song	2024-05-03	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as polypeptides. These are peptides containing ten or more amino acid residues.

Kingdom

Organic compounds

Super Class

Organic Polymers

Class

Polypeptides

Sub Class

Not Available

Direct Parent

Polypeptides

Alternative Parents

Substituents

Polypeptide
Cyclic alpha peptide
Phenylalanine or derivatives
Leucine or derivatives
N-acyl-l-alpha-amino acid
N-acyl-alpha amino acid or derivatives
N-acyl-alpha-amino acid
Alpha-amino acid amide
Amphetamine or derivatives
Alpha-amino acid or derivatives
N-substituted-alpha-amino acid
Heterocyclic fatty acid
Branched fatty acid
Alkyl aryl ether
Fatty acyl
Benzenoid
N-acyl-amine
Fatty amide
Monocyclic benzene moiety
Lactam
Carboxamide group
Oxacycle
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Ether
Carboxylic acid
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.33	ChemAxon
pKa (Strongest Acidic)	3.71	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	162.93 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	187.2 m³·mol⁻¹	ChemAxon
Polarizability	73.83 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for picrachinentin A (NP0333027)

MOL for NP0333027 (picrachinentin A)

3D MOL for NP0333027 (picrachinentin A)

3D SDF for NP0333027 (picrachinentin A)

3D-SDF for NP0333027 (picrachinentin A)

PDB for NP0333027 (picrachinentin A)

3D PDB for NP0333027 (picrachinentin A)

SMILES for NP0333027 (picrachinentin A)

INCHI for NP0333027 (picrachinentin A)

Structure for NP0333027 (picrachinentin A)

3D Structure for NP0333027 (picrachinentin A)