Np mrd loader

Showing NP-Card for 1′′-hydroxy-CBC (NP0332927)

Jump To Section:
IdentificationSpectraBioTaxonomyChemoTaxonomyPhysical propertiesLinksReferencesXML
Record Information
Version2.0
Created at2024-05-02 04:00:50 UTC
Updated at2024-09-03 04:20:41 UTC
NP-MRD IDNP0332927
Natural Product DOIhttps://doi.org/10.57994/2208
Secondary Accession NumbersNone
Natural Product Identification
Common Name1′′-hydroxy-CBC
Description 1′′-hydroxy-CBC was first documented in 2024 (PMID: 38477310). Based on a literature review very few articles have been published on 1′′-hydroxy-CBC.
Structure
Thumb
MOLSDFPDBSMILESInChI

MOL for NP0332927 (1′′-hydroxy-CBC)


  Mrv2104 01142306372D          

 24 25  0  0  0  0            999 V2000
   -3.6704    2.3317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401    3.2502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9525    3.3935    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4828    2.7615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2007    1.9863    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3882    1.8430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7309    1.3543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  2  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END
Download

3D MOL for NP0332927 (1′′-hydroxy-CBC)

Download
3D SDF for NP0332927 (1′′-hydroxy-CBC)

  Mrv2104 01142306372D          

 24 25  0  0  0  0            999 V2000
   -3.6704    2.3317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401    3.2502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9525    3.3935    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4828    2.7615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2007    1.9863    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3882    1.8430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7309    1.3543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 15 22  1  0  0  0  0
 22 23  2  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0332927

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCC(O)C1=CC2=C(C=CC(C)(CCC=C(C)C)O2)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1/C21H30O3/c1-5-6-9-18(22)16-13-19(23)17-10-12-21(4,24-20(17)14-16)11-7-8-15(2)3/h8,10,12-14,18,22-23H,5-7,9,11H2,1-4H3

> <INCHI_KEY>
QBKCLEYTVLMCTO-UHFFFAOYNA-N

> <FORMULA>
C21H30O3

> <MOLECULAR_WEIGHT>
330.468

> <EXACT_MASS>
330.219494826

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
39.57532433234099

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
7-(1-hydroxypentyl)-2-methyl-2-(4-methylpent-3-en-1-yl)-2H-chromen-5-ol

> <JCHEM_LOGP>
5.368856883666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.543312052145009

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.228704889748268

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0681929210999606

> <JCHEM_POLAR_SURFACE_AREA>
49.69

> <JCHEM_REFRACTIVITY>
101.11859999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
7-(1-hydroxypentyl)-2-methyl-2-(4-methylpent-3-en-1-yl)chromen-5-ol

> <JCHEM_VEBER_RULE>
0

$$$$

Download
3D-SDF for NP0332927 (1′′-hydroxy-CBC)
Download
PDB for NP0332927 (1′′-hydroxy-CBC)
HEADER    PROTEIN                                 14-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-JAN-23         0                                  
HETATM    1  C   UNK     0      -6.851   4.353   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.335   4.620   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -4.001   5.390   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -5.861   6.067   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -7.378   6.335   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -8.368   5.155   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -7.841   3.708   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -6.325   3.440   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -8.831   2.528   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -5.335   3.080   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.667   3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.667   4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.334   5.390   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334   5.390   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.334   6.930   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.001   5.390   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.668   5.390   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.000   3.080   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -1.334   0.770   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4   10                                             
CONECT    3    2   13                                                       
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    2   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   23                                                  
CONECT   13   12    3   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   22                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   15   23                                                       
CONECT   23   22   12   24                                                  
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   50    0
END

Download
3D PDB for NP0332927 (1′′-hydroxy-CBC)
Download
SMILES for NP0332927 (1′′-hydroxy-CBC)
CCCCC(O)C1=CC2=C(C=CC(C)(CCC=C(C)C)O2)C(O)=C1
Download
INCHI for NP0332927 (1′′-hydroxy-CBC)
InChI=1/C21H30O3/c1-5-6-9-18(22)16-13-19(23)17-10-12-21(4,24-20(17)14-16)11-7-8-15(2)3/h8,10,12-14,18,22-23H,5-7,9,11H2,1-4H3
Download
View in JSmol
SynonymsNot Available
Chemical FormulaC21H30O3
Average Mass330.4680 Da
Monoisotopic Mass330.21949 Da
IUPAC Name7-(1-hydroxypentyl)-2-methyl-2-(4-methylpent-3-en-1-yl)-2H-chromen-5-ol
Traditional Name7-(1-hydroxypentyl)-2-methyl-2-(4-methylpent-3-en-1-yl)chromen-5-ol
CAS Registry NumberNot Available
SMILES
CCCCC(O)C1=CC2=C(C=CC(C)(CCC=C(C)C)O2)C(O)=C1
InChI Identifier
InChI=1/C21H30O3/c1-5-6-9-18(22)16-13-19(23)17-10-12-21(4,24-20(17)14-16)11-7-8-15(2)3/h8,10,12-14,18,22-23H,5-7,9,11H2,1-4H3
InChI KeyQBKCLEYTVLMCTO-UHFFFAOYNA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR1H NMR Spectrum (1D, 500 MHz, CDCL3, experimental)jdm12@illinois.eduUniversity of Illinois at Urbana ChampaignJonathan Maturano2024-05-02View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, CDCl3, experimental)jdm12@illinois.eduUniversity of Illinois at Urbana ChampaignJonathan Maturano2024-05-02View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.37ChemAxon
pKa (Strongest Acidic)9.23ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area49.69 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity101.12 m³·mol⁻¹ChemAxon
Polarizability39.58 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available