NP-MRD: Showing NP-Card for stylimassalin A (NP0332851)

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Record Information

Version

1.0

Created at

2024-04-29 07:45:10 UTC

Updated at

2024-04-29 07:45:44 UTC

NP-MRD ID

NP0332851

Secondary Accession Numbers

None

Natural Product Identification

Common Name

stylimassalin A

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01112310222D          

 21 23  0  0  0  0            999 V2000
    3.2789    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2949    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5249    1.8646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7179    2.0361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1659    1.4230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6411    1.5945    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4630    2.8207    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0150    3.4338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7601    4.2184    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8220    3.2623    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0769    2.4777    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8839    2.3061    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 11 19  1  0  0  0  0
 19 20  2  0  0  0  0
 10 21  2  0  0  0  0
  7 21  1  0  0  0  0
  2 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0332851

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(C2=C3N(C=C2)C(O)CNC3=O)C(=O)NC(N)=N1

> <INCHI_IDENTIFIER>
InChI=1/C12H13N5O4/c1-21-11-7(9(19)15-12(13)16-11)5-2-3-17-6(18)4-14-10(20)8(5)17/h2-3,6,18H,4H2,1H3,(H,14,20)(H3,13,15,16,19)

> <INCHI_KEY>
ZQISVYYYDWCJCX-UHFFFAOYNA-N

> <FORMULA>
C12H13N5O4

> <MOLECULAR_WEIGHT>
291.267

> <EXACT_MASS>
291.096753919

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
27.450810524938937

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-amino-5-{4-hydroxy-1-oxo-1H,2H,3H,4H-pyrrolo[1,2-a]pyrazin-8-yl}-6-methoxy-3,4-dihydropyrimidin-4-one

> <JCHEM_LOGP>
-1.106437291

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.781084867878786

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.837026117824856

> <JCHEM_PKA_STRONGEST_BASIC>
0.11521498034511496

> <JCHEM_POLAR_SURFACE_AREA>
130.97

> <JCHEM_REFRACTIVITY>
81.1993

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-amino-5-{4-hydroxy-1-oxo-2H,3H,4H-pyrrolo[1,2-a]pyrazin-8-yl}-6-methoxy-3H-pyrimidin-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-JAN-23         0                                  
HETATM    1  O   UNK     0       6.121   3.850   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       7.454   1.540   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.121  -0.770   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       6.121  -2.310   0.000  0.00  0.00           O+0
HETATM    7  N   UNK     0       4.787   0.000   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       3.322  -0.476   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.417   0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.322   2.016   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.846   3.481   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.340   3.801   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       0.310   2.656   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -1.197   2.976   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0       0.864   5.265   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0       1.895   6.410   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       1.419   7.874   0.000  0.00  0.00           N+0
HETATM   18  N   UNK     0       3.401   6.090   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       3.877   4.625   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       5.383   4.305   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.787   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   21                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   21                                                  
CONECT   11   10   12   19                                                  
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   11   20                                                  
CONECT   20   19                                                            
CONECT   21   10    7    2                                                  
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₁₃N₅O₄

Average Mass

291.2670 Da

Monoisotopic Mass

291.09675 Da

IUPAC Name

2-amino-5-{4-hydroxy-1-oxo-1H,2H,3H,4H-pyrrolo[1,2-a]pyrazin-8-yl}-6-methoxy-3,4-dihydropyrimidin-4-one

Traditional Name

2-amino-5-{4-hydroxy-1-oxo-2H,3H,4H-pyrrolo[1,2-a]pyrazin-8-yl}-6-methoxy-3H-pyrimidin-4-one

CAS Registry Number

Not Available

SMILES

COC1=C(C2=C3N(C=C2)C(O)CNC3=O)C(=O)NC(N)=N1

InChI Identifier

InChI=1/C12H13N5O4/c1-21-11-7(9(19)15-12(13)16-11)5-2-3-17-6(18)4-14-10(20)8(5)17/h2-3,6,18H,4H2,1H3,(H,14,20)(H3,13,15,16,19)

InChI Key

ZQISVYYYDWCJCX-UHFFFAOYNA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, C2D6OS, experimental)	wangqi@hmfl.ac.cn	Qingdao University	Qi Wang	2024-04-29	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, C2D6OS, experimental)	wangqi@hmfl.ac.cn	Qingdao University	Qi Wang	2024-04-29	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, C2D6OS, experimental)	wangqi@hmfl.ac.cn	Qingdao University	Qi Wang	2024-04-29	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 126 MHz, C2D6OS, experimental)	wangqi@hmfl.ac.cn	Qingdao University	Qi Wang	2024-04-29	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, C2D6OS, experimental)	wangqi@hmfl.ac.cn	Qingdao University	Qi Wang	2024-04-29	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, C2D6OS, experimental)	wangqi@hmfl.ac.cn	Qingdao University	Qi Wang	2024-04-29	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 126 MHz, C2D6OS, experimental)	wangqi@hmfl.ac.cn	Qingdao University	Qi Wang	2024-04-29	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
massa		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.1	ChemAxon
pKa (Strongest Acidic)	7.84	ChemAxon
pKa (Strongest Basic)	0.12	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	130.97 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	81.2 m³·mol⁻¹	ChemAxon
Polarizability	27.45 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Not Available

Showing NP-Card for stylimassalin A (NP0332851)

MOL for NP0332851 (stylimassalin A)

3D MOL for NP0332851 (stylimassalin A)

3D SDF for NP0332851 (stylimassalin A)

3D-SDF for NP0332851 (stylimassalin A)

PDB for NP0332851 (stylimassalin A)

3D PDB for NP0332851 (stylimassalin A)

SMILES for NP0332851 (stylimassalin A)

INCHI for NP0332851 (stylimassalin A)

Structure for NP0332851 (stylimassalin A)

3D Structure for NP0332851 (stylimassalin A)