NP-MRD: Showing NP-Card for Elasnin B3 (NP0332818)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2024-04-22 17:47:04 UTC

Updated at

2024-09-03 04:20:23 UTC

NP-MRD ID

NP0332818

Natural Product DOI

https://doi.org/10.57994/2092

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Elasnin B3

Description

Based on a literature review very few articles have been published on Elasnin B3.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01042320232D          

 29 29  0  0  0  0            999 V2000
   -0.1744   -3.4594    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5246   -2.9916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4444   -2.0562    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9845   -1.4325    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.6530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2546   -0.0293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0647   -0.1853    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9845    0.7502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1744    0.9061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3657    0.2825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1758    0.4384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7159   -0.1853    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5261   -0.0293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0662   -0.6530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0957   -0.4971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6358   -1.1207    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0957    1.6857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4444    2.3093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1744    3.0889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4444    4.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9058    1.8416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4459    1.2179    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1758    2.6211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9860    2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2560    3.5566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0662    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3362    4.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 11 16  1  0  0  0  0
  6 16  2  0  0  0  0
 16 17  1  0  0  0  0
 10 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 18 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
M  END


  Mrv2104 01042320232D          

 29 29  0  0  0  0            999 V2000
   -0.1744   -3.4594    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5246   -2.9916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4444   -2.0562    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9845   -1.4325    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.6530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2546   -0.0293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0647   -0.1853    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9845    0.7502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1744    0.9061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3657    0.2825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1758    0.4384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7159   -0.1853    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5261   -0.0293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0662   -0.6530    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0957   -0.4971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6358   -1.1207    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0957    1.6857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4444    2.3093    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1744    3.0889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4444    4.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9058    1.8416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4459    1.2179    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1758    2.6211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9860    2.7770    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2560    3.5566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0662    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3362    4.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 11 16  1  0  0  0  0
  6 16  2  0  0  0  0
 16 17  1  0  0  0  0
 10 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 18 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0332818

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCC(=O)C(CCCC)C1=C(CCCC)C(O)=C(CCC(C)C)C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1/C25H42O4/c1-6-9-12-15-22(26)19(13-10-7-2)24-20(14-11-8-3)23(27)21(25(28)29-24)17-16-18(4)5/h18-19,27H,6-17H2,1-5H3

> <INCHI_KEY>
RJRQHZHNNTYAQM-UHFFFAOYNA-N

> <FORMULA>
C25H42O4

> <MOLECULAR_WEIGHT>
406.607

> <EXACT_MASS>
406.308309832

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
49.77691927483846

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-butyl-4-hydroxy-3-(3-methylbutyl)-6-(6-oxoundecan-5-yl)-2H-pyran-2-one

> <JCHEM_LOGP>
7.741172225

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.818779113540709

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.707970135311462

> <JCHEM_PKA_STRONGEST_BASIC>
-5.988333858402446

> <JCHEM_POLAR_SURFACE_AREA>
63.6

> <JCHEM_REFRACTIVITY>
120.99449999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
5-butyl-4-hydroxy-3-(3-methylbutyl)-6-(6-oxoundecan-5-yl)pyran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-JAN-23         0                                  
HETATM    1  C   UNK     0      -0.326  -6.458   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334  -5.293   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.846  -5.584   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.830  -3.838   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.838  -2.674   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -1.219   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.342  -0.055   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -3.854  -0.346   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      -1.838   1.400   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -0.326   1.691   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.683   0.527   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.195   0.818   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.203  -0.346   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.715  -0.055   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.723  -1.219   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.179  -0.928   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.187  -2.092   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.179   3.147   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.830   4.311   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.326   5.766   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.830   8.385   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.691   3.438   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.699   2.273   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       2.195   4.893   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.707   5.184   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.211   6.639   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.723   6.930   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.228   8.385   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   16                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   18                                                  
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   11    6   17                                                  
CONECT   17   16                                                            
CONECT   18   10   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23   18   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₄₂O₄

Average Mass

406.6070 Da

Monoisotopic Mass

406.30831 Da

IUPAC Name

5-butyl-4-hydroxy-3-(3-methylbutyl)-6-(6-oxoundecan-5-yl)-2H-pyran-2-one

Traditional Name

5-butyl-4-hydroxy-3-(3-methylbutyl)-6-(6-oxoundecan-5-yl)pyran-2-one

CAS Registry Number

Not Available

SMILES

CCCCCC(=O)C(CCCC)C1=C(CCCC)C(O)=C(CCC(C)C)C(=O)O1

InChI Identifier

InChI=1/C25H42O4/c1-6-9-12-15-22(26)19(13-10-7-2)24-20(14-11-8-3)23(27)21(25(28)29-24)17-16-18(4)5/h18-19,27H,6-17H2,1-5H3

InChI Key

RJRQHZHNNTYAQM-UHFFFAOYNA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, CD3OD, experimental)	islam.amin@riken.jp	RIEKN	Islam Adel Abdelhakim Amin	2024-04-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, CD3OD, experimental)	islam.amin@riken.jp	RIEKN	Islam Adel Abdelhakim Amin	2024-04-22	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, CD3OD, experimental)	islam.amin@riken.jp	RIEKN	Islam Adel Abdelhakim Amin	2024-04-22	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, CD3OD, experimental)	islam.amin@riken.jp	RIEKN	Islam Adel Abdelhakim Amin	2024-04-22	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, CD3OD, experimental)	islam.amin@riken.jp	RIEKN	Islam Adel Abdelhakim Amin	2024-04-22	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, CD3OD, experimental)	islam.amin@riken.jp	RIEKN	Islam Adel Abdelhakim Amin	2024-04-22	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, CD3OD, experimental)	islam.amin@riken.jp	RIEKN	Islam Adel Abdelhakim Amin	2024-04-22	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces RK18-A0406		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.74	ChemAxon
pKa (Strongest Acidic)	7.71	ChemAxon
pKa (Strongest Basic)	-6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	63.6 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	120.99 m³·mol⁻¹	ChemAxon
Polarizability	49.78 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Elasnin B3 (NP0332818)

MOL for NP0332818 (Elasnin B3)

3D MOL for NP0332818 (Elasnin B3)

3D SDF for NP0332818 (Elasnin B3)

3D-SDF for NP0332818 (Elasnin B3)

PDB for NP0332818 (Elasnin B3)

3D PDB for NP0332818 (Elasnin B3)

SMILES for NP0332818 (Elasnin B3)

INCHI for NP0332818 (Elasnin B3)

Structure for NP0332818 (Elasnin B3)

3D Structure for NP0332818 (Elasnin B3)