NP-MRD: Showing NP-Card for drymariamide D (NP0332778)

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Record Information

Version

2.0

Created at

2024-04-20 00:29:02 UTC

Updated at

2024-09-03 04:20:17 UTC

NP-MRD ID

NP0332778

Natural Product DOI

https://doi.org/10.57994/2049

Secondary Accession Numbers

None

Natural Product Identification

Common Name

drymariamide D

Description

Drymariamide D belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. Based on a literature review very few articles have been published on drymariamide D.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01022303052D          

 60 64  0  0  1  0            999 V2000
   -8.6836   -0.1909    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9644   -0.5982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7507   -1.4714    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.5576   -1.2999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8126   -0.5153    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2606    0.0978    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6196   -0.3437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4957   -2.2560    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1876   -2.7054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1445   -3.5292    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.7278   -4.1126    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3533   -4.8477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2783   -4.9528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4094   -3.9038    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5809   -4.7107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9678   -5.2628    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.1393   -6.0697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9240   -6.3247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1832   -5.0078    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7339   -5.6997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1084   -6.4348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2484   -5.1957    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9227   -2.3308    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3917   -1.0298    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0171   -0.2948    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6005    0.2886    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3356   -0.0859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2065   -0.9008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1933   -0.2516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7439   -0.9435    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9593   -0.6885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7878    0.1184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0032    0.3734    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3462   -1.2406    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5177   -2.0476    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7827   -2.4221    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.7395   -3.2460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4314   -3.6953    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1765   -4.4799    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3695   -4.6514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1145   -5.4361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5995   -6.1035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1145   -6.7709    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3299   -6.5160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3299   -5.6910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6154   -5.2785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9010   -5.6910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9010   -6.5160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6154   -6.9285    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7285   -5.0930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5355   -4.9215    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9100   -5.6566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4735   -5.8776    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0044   -3.6205    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0908   -1.9728    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3557   -2.3473    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6638   -1.8980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3125   -3.1712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5616   -0.9856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8187    0.4835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 10 14  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 15 22  2  0  0  0  0
  9 23  2  0  0  0  0
  2 24  1  0  0  0  0
 25 24  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 24 28  1  0  0  0  0
 25 29  1  0  0  0  0
 29 30  1  0  0  0  0
 31 30  1  0  0  0  0
 31 32  1  1  0  0  0
 32 33  1  0  0  0  0
 31 34  1  0  0  0  0
 34 35  1  0  0  0  0
 36 35  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 38  1  0  0  0  0
 39 40  1  1  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 41 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 44 49  1  0  0  0  0
 39 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 20 52  1  0  0  0  0
 50 53  2  0  0  0  0
 37 54  2  0  0  0  0
 36 55  1  1  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 56 58  1  0  0  0  0
 34 59  2  0  0  0  0
 29 60  2  0  0  0  0
M  END


  Mrv2104 01022303052D          

 60 64  0  0  1  0            999 V2000
   -8.6836   -0.1909    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9644   -0.5982    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7507   -1.4714    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.5576   -1.2999    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8126   -0.5153    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2606    0.0978    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6196   -0.3437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4957   -2.2560    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1876   -2.7054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1445   -3.5292    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.7278   -4.1126    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3533   -4.8477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2783   -4.9528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4094   -3.9038    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5809   -4.7107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9678   -5.2628    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.1393   -6.0697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9240   -6.3247    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1832   -5.0078    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7339   -5.6997    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1084   -6.4348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2484   -5.1957    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9227   -2.3308    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3917   -1.0298    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0171   -0.2948    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6005    0.2886    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3356   -0.0859    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2065   -0.9008    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1933   -0.2516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7439   -0.9435    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9593   -0.6885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7878    0.1184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0032    0.3734    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3462   -1.2406    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5177   -2.0476    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7827   -2.4221    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.7395   -3.2460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4314   -3.6953    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1765   -4.4799    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3695   -4.6514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1145   -5.4361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5995   -6.1035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1145   -6.7709    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3299   -6.5160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3299   -5.6910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6154   -5.2785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9010   -5.6910    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9010   -6.5160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6154   -6.9285    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7285   -5.0930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5355   -4.9215    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9100   -5.6566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4735   -5.8776    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0044   -3.6205    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0908   -1.9728    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3557   -2.3473    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6638   -1.8980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3125   -3.1712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5616   -0.9856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8187    0.4835    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 10 14  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 15 22  2  0  0  0  0
  9 23  2  0  0  0  0
  2 24  1  0  0  0  0
 25 24  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 24 28  1  0  0  0  0
 25 29  1  0  0  0  0
 29 30  1  0  0  0  0
 31 30  1  0  0  0  0
 31 32  1  1  0  0  0
 32 33  1  0  0  0  0
 31 34  1  0  0  0  0
 34 35  1  0  0  0  0
 36 35  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 38  1  0  0  0  0
 39 40  1  1  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 41 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  2  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 44 49  1  0  0  0  0
 39 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 20 52  1  0  0  0  0
 50 53  2  0  0  0  0
 37 54  2  0  0  0  0
 36 55  1  1  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
 56 58  1  0  0  0  0
 34 59  2  0  0  0  0
 29 60  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0332778

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C[C@@H]1NC(=O)[C@H](CO)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CC(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CO)NC(=O)CNC(=O)[C@H](CC2=CNC3=C2C=CC=C3)NC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C41H59N9O10/c1-22(2)15-27-36(55)46-28(17-24-18-42-26-10-6-5-9-25(24)26)35(54)43-19-34(53)44-31(21-52)41(60)50-14-8-11-32(50)38(57)47-29(16-23(3)4)40(59)49-13-7-12-33(49)39(58)48-30(20-51)37(56)45-27/h5-6,9-10,18,22-23,27-33,42,51-52H,7-8,11-17,19-21H2,1-4H3,(H,43,54)(H,44,53)(H,45,56)(H,46,55)(H,47,57)(H,48,58)/t27-,28-,29-,30-,31-,32-,33-/m0/s1

> <INCHI_KEY>
BKMVOXUYOFJYGC-MRNVWEPHSA-N

> <FORMULA>
C41H59N9O10

> <MOLECULAR_WEIGHT>
837.976

> <EXACT_MASS>
837.438489136

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
119

> <JCHEM_AVERAGE_POLARIZABILITY>
85.8080022099374

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6S,12S,18S,21S,24S,27S)-12,24-bis(hydroxymethyl)-18-[(1H-indol-3-yl)methyl]-3,21-bis(2-methylpropyl)-1,4,10,13,16,19,22,25-octaazatricyclo[25.3.0.0^{6,10}]triacontan-2,5,11,14,17,20,23,26-octone

> <JCHEM_LOGP>
-2.146096325666669

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.80221597103839

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.394664565385929

> <JCHEM_PKA_STRONGEST_BASIC>
-2.844399472439653

> <JCHEM_POLAR_SURFACE_AREA>
271.46999999999997

> <JCHEM_REFRACTIVITY>
215.4036

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6S,12S,18S,21S,24S,27S)-12,24-bis(hydroxymethyl)-18-(1H-indol-3-ylmethyl)-3,21-bis(2-methylpropyl)-1,4,10,13,16,19,22,25-octaazatricyclo[25.3.0.0^{6,10}]triacontan-2,5,11,14,17,20,23,26-octone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-JAN-23         0                                  
HETATM    1  O   UNK     0     -16.209  -0.356   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0     -14.867  -1.117   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -16.335  -2.747   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -17.841  -2.426   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -18.317  -0.962   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -17.286   0.183   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -19.823  -0.642   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0     -15.859  -4.211   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0     -17.150  -5.050   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -17.070  -6.588   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -18.159  -7.677   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -17.459  -9.049   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -15.453  -9.245   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0     -15.698  -7.287   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0     -16.018  -8.793   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -14.873  -9.824   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0     -15.193 -11.330   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0     -16.658 -11.806   0.000  0.00  0.00           O+0
HETATM   19  N   UNK     0     -13.409  -9.348   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0     -12.570 -10.640   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0     -13.269 -12.012   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0     -17.264  -9.699   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0     -18.522  -4.351   0.000  0.00  0.00           O+0
HETATM   24  N   UNK     0     -13.798  -1.922   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0     -13.099  -0.550   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -14.188   0.539   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -15.560  -0.160   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -15.319  -1.681   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -11.561  -0.470   0.000  0.00  0.00           C+0
HETATM   30  N   UNK     0     -10.722  -1.761   0.000  0.00  0.00           N+0
HETATM   31  C   UNK     0      -9.257  -1.285   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -8.937   0.221   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -7.473   0.697   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -8.113  -2.316   0.000  0.00  0.00           C+0
HETATM   35  N   UNK     0      -8.433  -3.822   0.000  0.00  0.00           N+0
HETATM   36  C   UNK     0      -7.061  -4.521   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -6.980  -6.059   0.000  0.00  0.00           C+0
HETATM   38  N   UNK     0      -8.272  -6.898   0.000  0.00  0.00           N+0
HETATM   39  C   UNK     0      -7.796  -8.363   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -6.290  -8.683   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -5.814 -10.147   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -6.719 -11.393   0.000  0.00  0.00           C+0
HETATM   43  N   UNK     0      -5.814 -12.639   0.000  0.00  0.00           N+0
HETATM   44  C   UNK     0      -4.349 -12.163   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      -4.349 -10.623   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -3.016  -9.853   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      -1.682 -10.623   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -1.682 -12.163   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -3.016 -12.933   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -8.827  -9.507   0.000  0.00  0.00           C+0
HETATM   51  N   UNK     0     -10.333  -9.187   0.000  0.00  0.00           N+0
HETATM   52  C   UNK     0     -11.032 -10.559   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      -8.351 -10.972   0.000  0.00  0.00           O+0
HETATM   54  O   UNK     0      -5.608  -6.758   0.000  0.00  0.00           O+0
HETATM   55  C   UNK     0      -5.769  -3.682   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      -4.397  -4.382   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      -3.106  -3.543   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      -4.317  -5.920   0.000  0.00  0.00           C+0
HETATM   59  O   UNK     0      -6.648  -1.840   0.000  0.00  0.00           O+0
HETATM   60  O   UNK     0     -10.862   0.903   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   24                                                  
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5                                                            
CONECT    8    3    9                                                       
CONECT    9    8   10   23                                                  
CONECT   10    9   11   14                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   10   13   15                                                  
CONECT   15   14   16   22                                                  
CONECT   16   15   17   19                                                  
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19   16   20                                                       
CONECT   20   19   21   52                                                  
CONECT   21   20                                                            
CONECT   22   15                                                            
CONECT   23    9                                                            
CONECT   24    2   25   28                                                  
CONECT   25   24   26   29                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   24                                                       
CONECT   29   25   30   60                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32   34                                                  
CONECT   32   31   33                                                       
CONECT   33   32                                                            
CONECT   34   31   35   59                                                  
CONECT   35   34   36                                                       
CONECT   36   35   37   55                                                  
CONECT   37   36   38   54                                                  
CONECT   38   37   39                                                       
CONECT   39   38   40   50                                                  
CONECT   40   39   41                                                       
CONECT   41   40   42   45                                                  
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45   49                                                  
CONECT   45   44   41   46                                                  
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   44                                                       
CONECT   50   39   51   53                                                  
CONECT   51   50   52                                                       
CONECT   52   51   20                                                       
CONECT   53   50                                                            
CONECT   54   37                                                            
CONECT   55   36   56                                                       
CONECT   56   55   57   58                                                  
CONECT   57   56                                                            
CONECT   58   56                                                            
CONECT   59   34                                                            
CONECT   60   29                                                            
MASTER        0    0    0    0    0    0    0    0   60    0  128    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₁H₅₉N₉O₁₀

Average Mass

837.9760 Da

Monoisotopic Mass

837.43849 Da

IUPAC Name

(3S,6S,12S,18S,21S,24S,27S)-12,24-bis(hydroxymethyl)-18-[(1H-indol-3-yl)methyl]-3,21-bis(2-methylpropyl)-1,4,10,13,16,19,22,25-octaazatricyclo[25.3.0.0^{6,10}]triacontan-2,5,11,14,17,20,23,26-octone

Traditional Name

(3S,6S,12S,18S,21S,24S,27S)-12,24-bis(hydroxymethyl)-18-(1H-indol-3-ylmethyl)-3,21-bis(2-methylpropyl)-1,4,10,13,16,19,22,25-octaazatricyclo[25.3.0.0^{6,10}]triacontan-2,5,11,14,17,20,23,26-octone

CAS Registry Number

Not Available

SMILES

CC(C)C[C@@H]1NC(=O)[C@H](CO)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CC(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@H](CO)NC(=O)CNC(=O)[C@H](CC2=CNC3=C2C=CC=C3)NC1=O

InChI Identifier

InChI=1S/C41H59N9O10/c1-22(2)15-27-36(55)46-28(17-24-18-42-26-10-6-5-9-25(24)26)35(54)43-19-34(53)44-31(21-52)41(60)50-14-8-11-32(50)38(57)47-29(16-23(3)4)40(59)49-13-7-12-33(49)39(58)48-30(20-51)37(56)45-27/h5-6,9-10,18,22-23,27-33,42,51-52H,7-8,11-17,19-21H2,1-4H3,(H,43,54)(H,44,53)(H,45,56)(H,46,55)(H,47,57)(H,48,58)/t27-,28-,29-,30-,31-,32-,33-/m0/s1

InChI Key

BKMVOXUYOFJYGC-MRNVWEPHSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum
MLEV NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 500 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum
1D_DEPT NMR	¹³C NMR Spectrum (1D, 126 MHz, C5D5N, experimental)	s19-zhangzongyi@simm.ac.cn	SIMM, CAS	zzy970618	2024-04-20	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Drymaria Drymaria cordata		Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Oligopeptides

Alternative Parents

Substituents

Alpha-oligopeptide
Cyclic alpha peptide
Leucine or derivatives
N-acyl-alpha amino acid or derivatives
Serine or derivatives
Alpha-amino acid amide
Alpha-amino acid or derivatives
N-substituted-alpha-amino acid
Indole or derivatives
Indole
Pyrrolidine-2-carboxamide
Pyrrolidine carboxylic acid or derivatives
N-acylpyrrolidine
Fatty acyl
Benzenoid
Substituted pyrrole
N-acyl-amine
Fatty amide
Heteroaromatic compound
Tertiary carboxylic acid amide
Pyrrolidine
Pyrrole
Lactam
Carboxamide group
Amino acid or derivatives
Azacycle
Organoheterocyclic compound
Secondary amine
Secondary aliphatic amine
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Amine
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.1	ChemAxon
pKa (Strongest Acidic)	11.39	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	9	ChemAxon
Polar Surface Area	271.47 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	215.4 m³·mol⁻¹	ChemAxon
Polarizability	85.81 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for drymariamide D (NP0332778)

MOL for NP0332778 (drymariamide D)

3D MOL for NP0332778 (drymariamide D)

3D SDF for NP0332778 (drymariamide D)

3D-SDF for NP0332778 (drymariamide D)

PDB for NP0332778 (drymariamide D)

3D PDB for NP0332778 (drymariamide D)

SMILES for NP0332778 (drymariamide D)

INCHI for NP0332778 (drymariamide D)

Structure for NP0332778 (drymariamide D)

3D Structure for NP0332778 (drymariamide D)