NP-MRD: Showing NP-Card for Noducyclamide B1 (NP0332612)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2024-03-11 22:38:57 UTC

Updated at

2024-09-03 04:19:46 UTC

NP-MRD ID

NP0332612

Natural Product DOI

https://doi.org/10.57994/1872

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Noducyclamide B1

Description

Noducyclamide B1 was first documented in 2024 (PMID: 38587271).

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01262300002D          

 27 26  0  0  0  0            999 V2000
   -7.0046    7.5059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    7.0934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    6.2684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    5.8559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8612    4.6184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8612    3.7934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1467    3.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1467    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4322    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7177    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0033    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2888    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5743    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1401    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8546    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  4  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  4  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  4  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  END


  Mrv2104 01262300002D          

 27 26  0  0  0  0            999 V2000
   -7.0046    7.5059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    7.0934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    6.2684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    5.8559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8612    4.6184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8612    3.7934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1467    3.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1467    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4322    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7177    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0033    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2888    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5743    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1401    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8546    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  4  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  4  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 17 16  1  4  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0332612

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCC=CCCCCCCCC=CCCCCC=CC

> <INCHI_IDENTIFIER>
InChI=1S/C27H50/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-26-24-22-20-18-16-14-12-10-8-6-4-2/h3,5,15,17,20,22H,4,6-14,16,18-19,21,23-27H2,1-2H3

> <INCHI_KEY>
KKITVGWWKFTZHZ-UHFFFAOYSA-N

> <FORMULA>
C27H50

> <MOLECULAR_WEIGHT>
374.697

> <EXACT_MASS>
374.39125161

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
54.30659921475613

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
heptacosa-2,8,17-triene

> <JCHEM_LOGP>
11.381314887666665

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
129.379

> <JCHEM_ROTATABLE_BOND_COUNT>
21

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
heptacosa-2,8,17-triene

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-JAN-23         0                                  
HETATM    1  C   UNK     0     -13.075  14.011   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -11.742  13.241   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -11.742  11.701   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -10.408  10.931   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -10.408   9.391   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -9.074   8.621   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -9.074   7.081   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -7.740   6.311   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -7.740   4.771   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -6.407   4.001   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.073   4.771   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.739   4.001   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.406   4.771   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.072   4.001   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.262   4.771   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.595   4.001   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.929   4.771   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.263   4.001   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      16.266   4.771   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₆₄H₁₁₂N₁₄O₁₉

Average Mass

1381.6790 Da

Monoisotopic Mass

1380.82282 Da

IUPAC Name

heptacosa-2,8,17-triene

Traditional Name

heptacosa-2,8,17-triene

CAS Registry Number

Not Available

SMILES

CCCCCCC[C@@H]1CC(=O)N[C@@H](C(C)C)C(=O)N[C@H]([C@@H](O)C(C)C)C(=O)N[C@@H](C)C(=O)N[C@H]([C@@H](O)C(C)C)C(=O)N[C@@H](CCC(N)=O)C(=O)N(C)[C@@H]([C@@H](C)CC)C(=O)N[C@H](CC(N)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)N2C[C@H](O)C[C@H]2C(=O)N[C@H](C(C)C)C(=O)N[C@@H]([C@@H](C)O)C(=O)N1

InChI Identifier

InChI=1S/C64H112N14O19/c1-16-18-19-20-21-22-37-25-44(84)71-45(29(3)4)57(90)76-49(52(85)31(7)8)60(93)67-34(12)54(87)75-50(53(86)32(9)10)61(94)69-39(23-24-42(65)82)63(96)77(15)51(33(11)17-2)62(95)70-40(27-43(66)83)55(88)74-48(36(14)80)64(97)78-28-38(81)26-41(78)56(89)72-46(30(5)6)58(91)73-47(35(13)79)59(92)68-37/h29-41,45-53,79-81,85-86H,16-28H2,1-15H3,(H2,65,82)(H2,66,83)(H,67,93)(H,68,92)(H,69,94)(H,70,95)(H,71,84)(H,72,89)(H,73,91)(H,74,88)(H,75,87)(H,76,90)/t33-,34-,35+,36+,37+,38+,39-,40+,41-,45-,46+,47-,48-,49+,50+,51-,52-,53-/m0/s1

InChI Key

AKDZKWRYVSGFBB-JOJSOTNPSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-08-26	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-08-26	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-08-26	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-08-26	View Spectrum
TOCSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-08-26	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-08-26	View Spectrum
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-08-26	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 151 MHz, C2D6OS, experimental)	chinsoon@osi.lv	Latvian Institute of Organic synthesis	Chin-Soon Phan	2024-03-11	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nodularia sp. NIES-3585		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	11.38	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	21	ChemAxon
Refractivity	129.38 m³·mol⁻¹	ChemAxon
Polarizability	54.31 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Mehjabin JJ, Phan CS, Okino T: Noducyclamides A1-A4, B1, and B2 from the Cyanobacterium Nodularia sp. NIES-3585. J Nat Prod. 2024 Apr 26;87(4):984-993. doi: 10.1021/acs.jnatprod.3c01272. Epub 2024 Apr 8. [PubMed:38587271 ]
DOI: 10.1021/acs.jnatprod.3c01272

Showing NP-Card for Noducyclamide B1 (NP0332612)

MOL for NP0332612 (Noducyclamide B1)

3D MOL for NP0332612 (Noducyclamide B1)

3D SDF for NP0332612 (Noducyclamide B1)

3D-SDF for NP0332612 (Noducyclamide B1)

PDB for NP0332612 (Noducyclamide B1)

3D PDB for NP0332612 (Noducyclamide B1)

SMILES for NP0332612 (Noducyclamide B1)

INCHI for NP0332612 (Noducyclamide B1)

Structure for NP0332612 (Noducyclamide B1)

3D Structure for NP0332612 (Noducyclamide B1)