NP-MRD: Showing NP-Card for Acremoside C (NP0332600)

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Record Information

Version

2.0

Created at

2024-03-06 20:01:39 UTC

Updated at

2024-09-03 04:19:44 UTC

NP-MRD ID

NP0332600

Natural Product DOI

https://doi.org/10.57994/1860

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Acremoside C

Description

Based on a literature review very few articles have been published on Acremoside C.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01062306192D          

 33 32  0  0  0  0            999 V2000
   -9.8624    9.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1480    9.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1480    8.7434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4335    8.3309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4335    7.5059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7190    7.0934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7190    6.2684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0046    5.8559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0046    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    4.6184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    3.7934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    3.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8612    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1467    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4322    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7177    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0033    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2888    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5743    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1401    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8546    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  4  0  0  0
 10 11  2  0  0  0  0
 12 11  1  4  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  4  0  0  0
 21 22  2  0  0  0  0
 23 22  1  4  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
M  END


  Mrv2104 01062306192D          

 33 32  0  0  0  0            999 V2000
   -9.8624    9.9809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1480    9.5684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1480    8.7434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4335    8.3309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4335    7.5059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7190    7.0934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7190    6.2684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0046    5.8559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0046    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    4.6184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2901    3.7934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    3.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5756    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8612    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1467    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4322    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7177    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0033    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2888    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5743    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1401    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8546    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  4  0  0  0
 10 11  2  0  0  0  0
 12 11  1  4  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  4  0  0  0
 21 22  2  0  0  0  0
 23 22  1  4  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0332600

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C=CCCCCCCCC=CC=CCCCCCCCC=CC=CCCCCCCCC=C

> <INCHI_IDENTIFIER>
InChI=1S/C33H56/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h3-4,19-26H,1-2,5-18,27-33H2

> <INCHI_KEY>
YBIXQNLWZUXYTH-UHFFFAOYSA-N

> <FORMULA>
C33H56

> <MOLECULAR_WEIGHT>
452.811

> <EXACT_MASS>
452.438201803

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
89

> <JCHEM_AVERAGE_POLARIZABILITY>
64.61859026397255

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
tritriaconta-1,10,12,21,23,32-hexaene

> <JCHEM_LOGP>
13.078829248333335

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
158.18980000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
tritriaconta-1,10,12,21,23,32-hexaene

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-JAN-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-JAN-23         0                                  
HETATM    1  C   UNK     0     -18.410  18.631   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -17.076  17.861   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -17.076  16.321   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -15.743  15.551   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -15.743  14.011   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -14.409  13.241   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -14.409  11.701   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -13.075  10.931   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -13.075   9.391   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -11.742   8.621   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -11.742   7.081   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -10.408   6.311   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -10.408   4.771   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -9.074   4.001   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -7.740   4.771   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -6.407   4.001   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.073   4.771   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.739   4.001   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.406   4.771   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.072   4.001   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.262   4.771   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.595   4.001   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.929   4.771   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.263   4.001   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      16.266   4.771   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₄₆O₉

Average Mass

538.6780 Da

Monoisotopic Mass

538.31418 Da

IUPAC Name

(2E,4R,6R,7S)-6,7-dihydroxy-3,7,11-trimethyl-1-{[(2R,3R,4R,5R)-1,2,4,5-tetrahydroxyhexan-3-yl]oxy}dodeca-2,10-dien-4-yl 2-phenylacetate

Traditional Name

(2E,4R,6R,7S)-6,7-dihydroxy-3,7,11-trimethyl-1-{[(2R,3R,4R,5R)-1,2,4,5-tetrahydroxyhexan-3-yl]oxy}dodeca-2,10-dien-4-yl 2-phenylacetate

CAS Registry Number

Not Available

SMILES

C[C@@H](O)[C@@H](O)[C@H](OC\C=C(/C)[C@@H](C[C@@H](O)[C@@](C)(O)CCC=C(C)C)OC(=O)CC1=CC=CC=C1)[C@H](O)CO

InChI Identifier

InChI=1S/C29H46O9/c1-19(2)10-9-14-29(5,36)25(33)17-24(38-26(34)16-22-11-7-6-8-12-22)20(3)13-15-37-28(23(32)18-30)27(35)21(4)31/h6-8,10-13,21,23-25,27-28,30-33,35-36H,9,14-18H2,1-5H3/b20-13+/t21-,23-,24-,25-,27-,28-,29+/m1/s1

InChI Key

DKVSREQIFHRJPB-YDWHUFPQSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD3OD, experimental)	ganml@imb.pumc.edu.cn	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	Maoluo Gan	2024-05-02	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CD3OD, experimental)	ganml@imb.pumc.edu.cn	Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College	Maoluo Gan	2024-05-02	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
sp. IMB18-086		Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as unsaturated aliphatic hydrocarbons. These are aliphatic Hydrocarbons that contains one or more unsaturated carbon atoms. These compounds contain one or more double or triple bonds.

Kingdom

Organic compounds

Super Class

Hydrocarbons

Class

Unsaturated hydrocarbons

Sub Class

Unsaturated aliphatic hydrocarbons

Direct Parent

Unsaturated aliphatic hydrocarbons

Alternative Parents

Olefins

Substituents

Unsaturated aliphatic hydrocarbon
Olefin
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.55	ChemAxon
pKa (Strongest Acidic)	12.84	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	156.91 Å²	ChemAxon
Rotatable Bond Count	18	ChemAxon
Refractivity	145.95 m³·mol⁻¹	ChemAxon
Polarizability	59.53 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Acremoside C (NP0332600)

MOL for NP0332600 (Acremoside C)

3D MOL for NP0332600 (Acremoside C)

3D SDF for NP0332600 (Acremoside C)

3D-SDF for NP0332600 (Acremoside C)

PDB for NP0332600 (Acremoside C)

3D PDB for NP0332600 (Acremoside C)

SMILES for NP0332600 (Acremoside C)

INCHI for NP0332600 (Acremoside C)

Structure for NP0332600 (Acremoside C)

3D Structure for NP0332600 (Acremoside C)