NP-MRD: Showing NP-Card for compound 7 in CD3OD (NP0332344)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

1.0

Created at

2024-01-09 12:07:43 UTC

Updated at

2024-09-03 04:18:52 UTC

NP-MRD ID

NP0332344

DOI

https://doi.org/10.57994/1546

Secondary Accession Numbers

None

Natural Product Identification

Common Name

compound 7 in CD3OD

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 01092412072D          

 22 23  0  0  1  0            999 V2000
    0.0322    0.2830    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9988    0.1293    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0585   -0.4033    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3085   -1.2742    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2645   -1.8678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0651   -1.6683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6380   -2.2619    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4386   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0116   -2.6560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7840   -3.4490    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8121   -2.4566    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2050    0.9543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2263    1.8206    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4906    0.5418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4906   -0.2832    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2829   -0.9087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2050   -0.6957    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2050   -1.5207    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9195   -0.2832    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9195    0.5418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7269    0.9233    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2359    1.1339    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
  2 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 15 14  1  0  0  0  0
 15 16  1  1  0  0  0
 17 15  1  0  0  0  0
 17 18  1  1  0  0  0
 17  2  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 12 20  1  0  0  0  0
 20 21  2  0  0  0  0
 14 22  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0332344

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C(=O)\C=C\C=C\C=C\[C@]1(C)[C@]2([H])OC(=O)C1(C)C(=O)[C@@H]2C

> <INCHI_IDENTIFIER>
InChI=1S/C16H18O4/c1-11-12(18)16(3)14(19)20-13(11)15(16,2)9-7-5-4-6-8-10-17/h4-11,13H,1-3H3/b5-4+,8-6+,9-7+/t11-,13+,15+,16?/m0/s1

> <INCHI_KEY>
QUTKULOODMLSRA-JGDXGTHOSA-N

> <FORMULA>
C16H18O4

> <MOLECULAR_WEIGHT>
274.316

> <EXACT_MASS>
274.12050906

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
38

> <JCHEM_AVERAGE_POLARIZABILITY>
29.56085930696425

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E,4E,6E)-7-[(1R,6R,7S)-4,6,7-trimethyl-3,5-dioxo-2-oxabicyclo[2.2.1]heptan-7-yl]hepta-2,4,6-trienal

> <JCHEM_LOGP>
2.5164729403333332

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.52023086671075

> <JCHEM_PKA_STRONGEST_BASIC>
-4.213322157908968

> <JCHEM_POLAR_SURFACE_AREA>
60.440000000000005

> <JCHEM_REFRACTIVITY>
77.5791

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4E,6E)-7-[(1R,6R,7S)-4,6,7-trimethyl-3,5-dioxo-2-oxabicyclo[2.2.1]heptan-7-yl]hepta-2,4,6-trienal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 09-JAN-24   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   09-JAN-24         0                                  
HETATM    1  C   UNK     0       0.060   0.528   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.864   0.241   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.109  -0.753   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.576  -2.379   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.494  -3.487   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.988  -3.114   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.058  -4.222   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.552  -3.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.622  -4.958   0.000  0.00  0.00           C+0
HETATM   10  H   UNK     0      -5.197  -6.438   0.000  0.00  0.00           H+0
HETATM   11  O   UNK     0      -7.116  -4.586   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.249   1.781   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.289   3.398   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.916   1.011   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.916  -0.529   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.528  -1.696   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.249  -1.299   0.000  0.00  0.00           C+0
HETATM   18  H   UNK     0       2.249  -2.839   0.000  0.00  0.00           H+0
HETATM   19  O   UNK     0       3.583  -0.529   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       3.583   1.011   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.090   1.724   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      -0.440   2.117   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   12   17                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    2   13   14   20                                             
CONECT   13   12                                                            
CONECT   14   12   15   22                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18    2   19                                             
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   12   21                                                  
CONECT   21   20                                                            
CONECT   22   14                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₈O₄

Average Mass

274.3160 Da

Monoisotopic Mass

274.12051 Da

IUPAC Name

(2E,4E,6E)-7-[(1R,6R,7S)-4,6,7-trimethyl-3,5-dioxo-2-oxabicyclo[2.2.1]heptan-7-yl]hepta-2,4,6-trienal

Traditional Name

(2E,4E,6E)-7-[(1R,6R,7S)-4,6,7-trimethyl-3,5-dioxo-2-oxabicyclo[2.2.1]heptan-7-yl]hepta-2,4,6-trienal

CAS Registry Number

Not Available

SMILES

[H]C(=O)\C=C\C=C\C=C\[C@]1(C)[C@]2([H])OC(=O)C1(C)C(=O)[C@@H]2C

InChI Identifier

InChI=1S/C16H18O4/c1-11-12(18)16(3)14(19)20-13(11)15(16,2)9-7-5-4-6-8-10-17/h4-11,13H,1-3H3/b5-4+,8-6+,9-7+/t11-,13+,15+,16?/m0/s1

InChI Key

QUTKULOODMLSRA-JGDXGTHOSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, C2D6OS, experimental)	838071903@qq.com	jinan university	FuLong Lin	2024-01-09	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	838071903@qq.com	jinan university	FuLong Lin	2024-01-09	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	838071903@qq.com	jinan university	FuLong Lin	2024-01-09	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	838071903@qq.com	jinan university	FuLong Lin	2024-01-09	View Spectrum
1D NMR	[¹³C, ] NMR Spectrum (2D, 101 MHz, CD3OD, experimental)	838071903@qq.com	jinan university	FuLong Lin	2024-01-09	View Spectrum
1D NMR	[¹³C, ] NMR Spectrum (2D, 101 MHz, CD3OD, experimental)	838071903@qq.com	jinan university	FuLong Lin	2024-01-09	View Spectrum
1D NMR	[¹H, ] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	838071903@qq.com	jinan university	FuLong Lin	2024-01-09	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 400.133121014, CD₃OD, simulated)	838071903@qq.com	jinan university	FuLong Lin	2024-05-02	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
sp. JNU18266-03		Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.52	ChemAxon
pKa (Strongest Acidic)	19.52	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	60.44 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	77.58 m³·mol⁻¹	ChemAxon
Polarizability	29.56 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Lin FL, Gao JL, Xu Q, Wang GQ, Xiao LY, Dong L, Tang W, Lv JM, Chen GD, Wang Y, Yin ZN, Lu LG, Hu D, Gao H: Absolute Configuration of Oxabornyl Polyenes Prugosenes A1-A3 and Structural Revision of Prugosene A2. J Nat Prod. 2024 Mar 6. doi: 10.1021/acs.jnatprod.3c01143. [PubMed:38447084 ]

Showing NP-Card for compound 7 in CD3OD (NP0332344)

MOL for NP0332344 (compound 7 in CD3OD)

3D MOL for NP0332344 (compound 7 in CD3OD)

3D SDF for NP0332344 (compound 7 in CD3OD)

3D-SDF for NP0332344 (compound 7 in CD3OD)

PDB for NP0332344 (compound 7 in CD3OD)

3D PDB for NP0332344 (compound 7 in CD3OD)

SMILES for NP0332344 (compound 7 in CD3OD)

INCHI for NP0332344 (compound 7 in CD3OD)

Structure for NP0332344 (compound 7 in CD3OD)

3D Structure for NP0332344 (compound 7 in CD3OD)