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Record Information
Version2.0
Created at2023-12-21 12:01:37 UTC
Updated at2024-09-03 04:18:39 UTC
NP-MRD IDNP0332270
Natural Product DOIhttps://doi.org/10.57994/1465
Secondary Accession NumbersNone
Natural Product Identification
Common NameCompound 1
DescriptionCompound 1 belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively. Compound 1 was first documented in 2024 (PMID: 39307743). Based on a literature review a significant number of articles have been published on Compound 1 (PMID: 39302043) (PMID: 39307807) (PMID: 39311017) (PMID: 39307783) (PMID: 39307782) (PMID: 39297730).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC24H30O8
Average Mass446.4960 Da
Monoisotopic Mass446.19407 Da
IUPAC Name[(2R,3S,4R)-2-(3,4-dimethoxyphenyl)-4-[(S)-(3,4-dimethoxyphenyl)(hydroxy)methyl]oxolan-3-yl]methyl acetate
Traditional Name[(2R,3S,4R)-2-(3,4-dimethoxyphenyl)-4-[(S)-(3,4-dimethoxyphenyl)(hydroxy)methyl]oxolan-3-yl]methyl acetate
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CO[C@@H](C2=CC(OC)=C(OC)C=C2)[C@]1([H])COC(C)=O)[C@H](O)C1=CC=C(OC)C(OC)=C1
InChI Identifier
InChI=1S/C24H30O8/c1-14(25)31-13-18-17(23(26)15-6-8-19(27-2)21(10-15)29-4)12-32-24(18)16-7-9-20(28-3)22(11-16)30-5/h6-11,17-18,23-24,26H,12-13H2,1-5H3/t17-,18+,23+,24-/m0/s1
InChI KeyNKLSPZQYPWFUIO-QWAURFOWSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D_DEPT NMR13C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-04-30View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
HMQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
1D_DEPT NMR13C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
HMQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Peperomia pseudopereskiifolia
      Not Available
Peperomia pseudopereskiifolia
      Not Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassFuranoid lignans
Sub ClassTetrahydrofuran lignans
Direct Parent7,9'-epoxylignans
Alternative Parents
Substituents
  • 7,9p-epoxylignan
  • Fatty alcohol ester
  • Phenoxy compound
  • Methoxybenzene
  • Phenol ether
  • Anisole
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Tetrahydrofuran
  • Secondary alcohol
  • Carboxylic acid ester
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Aromatic alcohol
  • Organooxygen compound
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.85ChemAxon
pKa (Strongest Acidic)14.09ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area92.68 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity116.73 m³·mol⁻¹ChemAxon
Polarizability47.6 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Wu JJ, Peng ZC, He J, Ding K, Xu JK, Zhang WK: [A new secoiridoid from Cornus officinalis]. Zhongguo Zhong Yao Za Zhi. 2024 Aug;49(15):4111-4117. doi: 10.19540/j.cnki.cjcmm.20240507.201. [PubMed:39307743 ]
  2. Yang JF, Ma YY, Xie N, Tang YT, Du J, Yin XR, Lin ZG, Han ZG: In Situ Ligand-Transformation-Assisted Assembly of a Polyoxometalate and Silver-Phosphine Oxide Cluster for Colorimetric Detection of Phenol Contaminants. Inorg Chem. 2024 Sep 20. doi: 10.1021/acs.inorgchem.4c03067. [PubMed:39302043 ]
  3. Long CY, Li QJ, Zhou L, Hu ZX, Yang J: [Chemical constituents of Viburnum utile and their inhibitory activities against alpha-glucosidase]. Zhongguo Zhong Yao Za Zhi. 2024 Sep;49(17):4695-4701. doi: 10.19540/j.cnki.cjcmm.20240607.201. [PubMed:39307807 ]
  4. Shi X, Zhao Y, Zhou Y, Li Z, Tang Y, Fu H, Liu Y, Zhang ZG, Pu M, Lei M: The GaCl(3)-Catalyzed Knoevenagel Condensation To Achieve Acceptor-Donor-Acceptor Small-Molecule Acceptors: A DFT Mechanistic Study. J Org Chem. 2024 Sep 23. doi: 10.1021/acs.joc.4c01806. [PubMed:39311017 ]
  5. Yang CY, Chen KL, Liu Y, Yi C, Jia XB, Liu YB: [Secondary metabolites of endophytic fungus Talaromyces malicola hosted in Armadillidium vulgare]. Zhongguo Zhong Yao Za Zhi. 2024 Aug;49(16):4470-4476. doi: 10.19540/j.cnki.cjcmm.20240520.201. [PubMed:39307783 ]
  6. Wang JP, Guo J, Wang WW, Yang CX, Yan LH, Wang ZM: [A new neolignan glycoside from Acori Tatarinowii Rhizoma]. Zhongguo Zhong Yao Za Zhi. 2024 Aug;49(16):4460-4469. doi: 10.19540/j.cnki.cjcmm.20240511.201. [PubMed:39307782 ]
  7. Sum WC, Ebada SS, Kellner H, Stadler M: p-Terphenyl and Orsellinic Acid Derivatives from the European Polyporales Terana coerulea and Sparassis brevipes. Chem Biodivers. 2024 Sep 19:e202401597. doi: 10.1002/cbdv.202401597. [PubMed:39297730 ]
  8. Hara M, Toriumi N, Uchiyama M, Nozaki K: Synthesis, Structure, and Optical Property of [6]Cyclo-1,2-naphthylene. Chemistry. 2024 Sep 21:e202402323. doi: 10.1002/chem.202402323. [PubMed:39305152 ]
  9. Driess M, Yao S, Budde MS, Xiong Y, Yang X, Zhao L: Disilicon-Mediated Carbon Monoxide Activation: From a 1,2,3-Trisila- to 1,3-Disilacyclopentadienes with Hypercoordinate lambda4Si-lambda3C Double Bonds. Angew Chem Int Ed Engl. 2024 Sep 21:e202414696. doi: 10.1002/anie.202414696. [PubMed:39305142 ]
  10. Njue AW, Omolo J, Ramos RS, Santos CBR, Kimani NM: Ergostanes from the mushroom Trametes versicolor and their cancer cell inhibition: In vitro and in silico evaluation. Steroids. 2024 Sep 19;212:109511. doi: 10.1016/j.steroids.2024.109511. [PubMed:39303896 ]
  11. Castillo UG, Uekusa Y, Nishimura T, Kiuchi F, Martinez ML, Menjivar J, Nakajima-Shimada J, Nunez MJ, Kikuchi H: Anti-trypanosomal Lignans Isolated from Salvadoran Peperomia pseudopereskiifolia. J Nat Prod. 2024 Apr 26;87(4):1067-1074. doi: 10.1021/acs.jnatprod.4c00022. Epub 2024 Apr 17. [PubMed:38631020 ]
  12. DOI: 10.1021/acs.jnatprod.4c00022
  13. PMID: 38631020