Np mrd loader

Record Information
Version2.0
Created at2023-12-21 12:00:56 UTC
Updated at2024-09-03 04:18:39 UTC
NP-MRD IDNP0332266
Natural Product DOIhttps://doi.org/10.57994/1461
Secondary Accession NumbersNone
Natural Product Identification
Common NameCompound 2
DescriptionCompound 2 belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively. Compound 2 was first documented in 2024 (PMID: 39311441). Based on a literature review a significant number of articles have been published on Compound 2 (PMID: 39302043) (PMID: 39303061) (PMID: 39292639) (PMID: 39273546) (PMID: 39292373) (PMID: 39290291).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC23H28O8
Average Mass432.4690 Da
Monoisotopic Mass432.17842 Da
IUPAC Name[(2R,3S,4R)-4-[(S)-(3,4-dimethoxyphenyl)(hydroxy)methyl]-2-(4-hydroxy-3-methoxyphenyl)oxolan-3-yl]methyl acetate
Traditional Name[(2R,3S,4R)-4-[(S)-(3,4-dimethoxyphenyl)(hydroxy)methyl]-2-(4-hydroxy-3-methoxyphenyl)oxolan-3-yl]methyl acetate
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CO[C@@H](C2=CC(OC)=C(O)C=C2)[C@]1([H])COC(C)=O)[C@H](O)C1=CC=C(OC)C(OC)=C1
InChI Identifier
InChI=1S/C23H28O8/c1-13(24)30-12-17-16(22(26)14-6-8-19(27-2)21(9-14)29-4)11-31-23(17)15-5-7-18(25)20(10-15)28-3/h5-10,16-17,22-23,25-26H,11-12H2,1-4H3/t16-,17+,22+,23-/m0/s1
InChI KeyCQGOQFKROGFLJV-QOKUDNMUSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
COSY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
HMQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)Not AvailableKeio UniversityHaruhisa Kikuchi2024-03-06View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
HMQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)halkiku@keio.jpKeio UniversityHaruhisa Kikuchi2024-05-14View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Peperomia pseudopereskiifolia
      Not Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassFuranoid lignans
Sub ClassTetrahydrofuran lignans
Direct Parent7,9'-epoxylignans
Alternative Parents
Substituents
  • 7,9p-epoxylignan
  • Fatty alcohol ester
  • Methoxyphenol
  • Phenoxy compound
  • Methoxybenzene
  • Phenol ether
  • Anisole
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Tetrahydrofuran
  • Secondary alcohol
  • Carboxylic acid ester
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Aromatic alcohol
  • Organooxygen compound
  • Alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.7ChemAxon
pKa (Strongest Acidic)9.91ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area103.68 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity112.24 m³·mol⁻¹ChemAxon
Polarizability45.37 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Zhu T, Li C, Tang J, Chen L, Yu G, Yang Y, Cheng G, Xiao C, Yang H: High-Energy and Thermally Stable Energetic Materials Based on an Azo-Fused Dinitramino Compound. Org Lett. 2024 Sep 23. doi: 10.1021/acs.orglett.4c03345. [PubMed:39311441 ]
  2. Yang JF, Ma YY, Xie N, Tang YT, Du J, Yin XR, Lin ZG, Han ZG: In Situ Ligand-Transformation-Assisted Assembly of a Polyoxometalate and Silver-Phosphine Oxide Cluster for Colorimetric Detection of Phenol Contaminants. Inorg Chem. 2024 Sep 20. doi: 10.1021/acs.inorgchem.4c03067. [PubMed:39302043 ]
  3. Yang YK, Geng XY, Liu T, Ma YJ, Han SD, Xue ZZ, Pan J: Dual-Template-Directed Zero-Dimensional Bismuth Chlorides: Structures, Luminescence, Photoinduced Chromism, and Enhanced Proton Conductivity. Inorg Chem. 2024 Sep 20. doi: 10.1021/acs.inorgchem.4c03047. [PubMed:39303061 ]
  4. Lu X, Lin X, Huang H, Yang J: Polynitro-1,2,4-triazole Energetic Materials with N-Amino Functionalization. J Org Chem. 2024 Sep 18. doi: 10.1021/acs.joc.4c01771. [PubMed:39292639 ]
  5. Dai W, Lei M, Yin Q, Nan H, Qian G: Isolation and Characterization of Novel Pueroside B Isomers and Other Bioactive Compounds from Pueraria lobata Roots: Structure Elucidation, alpha-Glucosidase, and alpha-Amylase Inhibition Studies. Int J Mol Sci. 2024 Sep 4;25(17):9602. doi: 10.3390/ijms25179602. [PubMed:39273546 ]
  6. Gentili V, Beltrami S, Cuffaro D, Cianci G, Maini G, Rizzo R, Macchia M, Rossello A, Bortolotti D, Nuti E: JG26 attenuates ADAM17 metalloproteinase-mediated ACE2 receptor processing and SARS-CoV-2 infection in vitro. Pharmacol Rep. 2024 Sep 18. doi: 10.1007/s43440-024-00650-0. [PubMed:39292373 ]
  7. Korol N, Holovko-Kamoshenkova O, Mariychuk R, Slivka M: Insights into bacterial interactions: Comparing fluorine-containing 1,2,4-triazoles to antibiotics using molecular docking and molecular dynamics approaches. Heliyon. 2024 Sep 6;10(17):e37538. doi: 10.1016/j.heliyon.2024.e37538. eCollection 2024 Sep 15. [PubMed:39290291 ]
  8. Dai H, Zhang Y, Jin X, Yang W, Luo Y, Yang K, Fu Y, Xu W: Reaction Time Induced a Two-Step Dissolution and Recrystallization Structural Transformation with Three Eu Metal-Organic Frameworks: Crystal Structures and Multiresponsive Fluorescence Detection. Inorg Chem. 2024 Sep 30;63(39):18058-18072. doi: 10.1021/acs.inorgchem.4c02643. Epub 2024 Sep 17. [PubMed:39287663 ]
  9. Yin WH, Li PY, Huang HH, Feng L, Liu SH, Liu X, Bai FQ: Porphyrin photosensitizer molecules as effective medicine candidates for photodynamic therapy: electronic structure information aided design. RSC Adv. 2024 Sep 16;14(40):29368-29383. doi: 10.1039/d4ra05585c. eCollection 2024 Sep 12. [PubMed:39285886 ]
  10. Huang R, Ma S, Wu J, Riaz A, Song L, Zhou S, Zhou R, Qiu J, He J: A new tetrahydroxybenzophenone from a marine-associated fungus of penicillium sp. and its potential antibacterial activity. Nat Prod Res. 2024 Sep 16:1-8. doi: 10.1080/14786419.2024.2404651. [PubMed:39282886 ]
  11. Liu G, Gui Y, Shi W, Yang H, Feng S, Liang S, Zhou C, Zhou Q, Li H, Li G, Si H, Ou C: Therapeutic efficacy of compound organic acids administration on methicillin-resistant Staphylococcus aureus-induced arthritis in broilers. Poult Sci. 2024 Sep 1;103(12):104219. doi: 10.1016/j.psj.2024.104219. [PubMed:39278110 ]
  12. Liu YQ, Huang S, Leng JD, Lin WQ: 1D Lead Bromide Hybrids Directed by Complex Cations: Syntheses, Structures, Optical and Photocatalytic Properties. Molecules. 2024 Sep 5;29(17):4217. doi: 10.3390/molecules29174217. [PubMed:39275065 ]
  13. Ong HW, Yang X, Smith JL, Taft-Benz S, Howell S, Dickmander RJ, Havener TM, Sanders MK, Brown JW, Counago RM, Chang E, Kramer A, Moorman NJ, Heise M, Axtman AD, Drewry DH, Willson TM: Strategic Fluorination to Achieve a Potent, Selective, Metabolically Stable, and Orally Bioavailable Inhibitor of CSNK2. Molecules. 2024 Sep 2;29(17):4158. doi: 10.3390/molecules29174158. [PubMed:39275006 ]
  14. Aleksandrova A, Mekhtiev A, Timoshenko O, Kugaevskaya E, Gureeva T, Gisina A, Zavialova M, Scherbakov K, Rudovich A, Zhabinskii V, Khripach V: Effects of Isoxazolyl Steroids on Key Genes of Sonic Hedgehog Cascade Expression in Tumor Cells. Molecules. 2024 Aug 26;29(17):4026. doi: 10.3390/molecules29174026. [PubMed:39274874 ]