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Record Information
Version2.0
Created at2023-11-21 12:01:15 UTC
Updated at2024-09-03 04:18:06 UTC
NP-MRD IDNP0332125
Natural Product DOIhttps://doi.org/10.57994/1282
Secondary Accession NumbersNone
Natural Product Identification
Common Name3β,16β-dihydroxy-5α-pregnane-20-carboxylic acid 16,22-lactone-3-O-β-D-glucopyranosyl-(1→3)-β-D-glucopyranosyl-(1→4)-galactopyranoside
Description3β,16β-Dihydroxy-5α-pregnane-20-carboxylic acid 16,22-lactone-3-O-β-D-glucopyranosyl-(1→3)-β-D-glucopyranosyl-(1→4)-galactopyranoside belongs to the class of organic compounds known as simplexides. These are glycolipids composed of a long chain secondary alcohol glycosylated by an alpha-D-glucosyl-(1->4)-beta-D-galactosyl disaccharide residue. 3β,16β-dihydroxy-5α-pregnane-20-carboxylic acid 16,22-lactone-3-O-β-D-glucopyranosyl-(1→3)-β-D-glucopyranosyl-(1→4)-galactopyranoside was first documented in 2023 (PMID: 37968243). Based on a literature review very few articles have been published on 3β,16β-dihydroxy-5α-pregnane-20-carboxylic acid 16,22-lactone-3-O-β-D-glucopyranosyl-(1→3)-β-D-glucopyranosyl-(1→4)-galactopyranoside.
Structure
Thumb
Synonyms
ValueSource
3Β,16β-dihydroxy-5α-pregnane-20-carboxylate 16,22-lactone-3-O-β-D-glucopyranosyl-(1→3)-β-D-glucopyranosyl-(1→4)-galactopyranosideGenerator
Chemical FormulaC40H64O18
Average Mass832.9340 Da
Monoisotopic Mass832.40927 Da
IUPAC Name(1R,2S,4S,7S,8R,9S,12S,13S,16S,18S)-16-{[(2R,3R,4R,5R,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-{[(2S,3R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-7,9,13-trimethyl-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-6-one
Traditional Name(1R,2S,4S,7S,8R,9S,12S,13S,16S,18S)-16-{[(2R,3R,4R,5R,6R)-5-{[(2S,3R,4S,5R,6R)-3,5-dihydroxy-6-(hydroxymethyl)-4-{[(2S,3R,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-7,9,13-trimethyl-5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosan-6-one
CAS Registry NumberNot Available
SMILES
[H][C@]12C[C@@]3([H])[C@]4([H])CC[C@@]5([H])C[C@H](CC[C@]5(C)[C@@]4([H])CC[C@]3(C)[C@@]1([H])[C@H](C)C(=O)O2)O[C@@H]1O[C@H](CO)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)C(O)[C@H]3O)[C@H]2O)[C@H](O)[C@H]1O
InChI Identifier
InChI=1S/C40H64O18/c1-15-25-21(53-35(15)51)11-20-18-5-4-16-10-17(6-8-39(16,2)19(18)7-9-40(20,25)3)52-36-31(49)29(47)33(24(14-43)56-36)57-38-32(50)34(27(45)23(13-42)55-38)58-37-30(48)28(46)26(44)22(12-41)54-37/h15-34,36-38,41-50H,4-14H2,1-3H3/t15-,16-,17-,18+,19-,20-,21-,22+,23+,24+,25-,26+,27+,28?,29+,30+,31+,32+,33-,34-,36+,37-,38-,39-,40-/m0/s1
InChI KeyASSSLAPJYILCPJ-ICJYXLMTSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 151 MHz, C5D5N, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
NOESY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 600 MHz, C5D5N, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, C5D5N, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, C5D5N, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, C2D6OS, experimental)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR1H NMR Spectrum (1D, 600.203706235, C5D5deposition_typeN, simulated)wuhonghua2011@tjutcm.edu.cnTianjin University of Traditional Chinese MedicineHong-Hua Wu2024-05-03View Spectrum
Species
Species of Origin
Species NameSourceReference
lyratum
      Not Available
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as simplexides. These are glycolipids composed of a long chain secondary alcohol glycosylated by an alpha-D-glucosyl-(1->4)-beta-D-galactosyl disaccharide residue.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl glycosides
Direct ParentSimplexides
Alternative Parents
Substituents
  • Simplexide backbone
  • Steroidal glycoside
  • Steroid lactone
  • Steroid ester
  • Diterpenoid
  • Diterpene lactone
  • Steroid
  • Fatty acyl glycoside of mono- or disaccharide
  • Fatty alcohol ester
  • Fatty alcohol
  • Fatty acid ester
  • Oxane
  • Monosaccharide
  • Gamma butyrolactone
  • Tetrahydrofuran
  • Secondary alcohol
  • Lactone
  • Carboxylic acid ester
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.6ChemAxon
pKa (Strongest Acidic)11.78ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area283.98 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity193.85 m³·mol⁻¹ChemAxon
Polarizability88.72 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General ReferencesNot Available