NP-MRD: Showing NP-Card for maydistacin D (NP0332096)

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Record Information

Version

2.0

Created at

2023-11-02 12:05:41 UTC

Updated at

2024-09-03 04:17:56 UTC

NP-MRD ID

NP0332096

Natural Product DOI

https://doi.org/10.57994/1224

Secondary Accession Numbers

None

Natural Product Identification

Common Name

maydistacin D

Description

Maydistacin D belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units. Based on a literature review very few articles have been published on maydistacin D.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 11022312052D          

 31 33  0  0  1  0            999 V2000
    4.9795   -0.7410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3166   -1.2322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5296   -0.9846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2673   -0.2024    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8136    0.4158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5513    1.1980    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4588   -0.0385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0510   -1.6566    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5598   -0.9937    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5422   -2.3194    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3244   -2.0571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9963   -2.5358    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0334   -2.9823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0636   -2.9914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1273   -3.8920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4645   -4.3831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7077   -4.0547    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5584   -5.2028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8956   -5.6939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1388   -5.3655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0448   -4.5458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2924   -3.7589    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2880   -4.2174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1941   -3.3977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8569   -2.9066    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6137   -3.2350    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7630   -2.0869    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0566   -2.1809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4258   -1.5958    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6690   -1.2673    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2688   -1.9189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  4  3  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  4  7  1  6  0  0  0
  8  3  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  2  0  0  0  0
 10 13  1  6  0  0  0
 10 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  0  0  0  0
 25 26  1  1  0  0  0
 27 25  1  0  0  0  0
 27 28  1  6  0  0  0
 27 29  1  0  0  0  0
 29 30  1  6  0  0  0
 27 30  1  0  0  0  0
 29 31  1  0  0  0  0
  8 31  1  0  0  0  0
M  END


  Mrv2104 11022312052D          

 31 33  0  0  1  0            999 V2000
    4.9795   -0.7410    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3166   -1.2322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5296   -0.9846    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2673   -0.2024    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8136    0.4158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5513    1.1980    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4588   -0.0385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0510   -1.6566    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5598   -0.9937    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5422   -2.3194    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3244   -2.0571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9963   -2.5358    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0334   -2.9823    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0636   -2.9914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1273   -3.8920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4645   -4.3831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7077   -4.0547    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5584   -5.2028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8956   -5.6939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1388   -5.3655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0448   -4.5458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2924   -3.7589    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2880   -4.2174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1941   -3.3977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8569   -2.9066    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6137   -3.2350    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7630   -2.0869    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0566   -2.1809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4258   -1.5958    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6690   -1.2673    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2688   -1.9189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  4  3  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  4  7  1  6  0  0  0
  8  3  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  2  0  0  0  0
 10 13  1  6  0  0  0
 10 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  0  0  0  0
 25 26  1  1  0  0  0
 27 25  1  0  0  0  0
 27 28  1  6  0  0  0
 27 29  1  0  0  0  0
 29 30  1  6  0  0  0
 27 30  1  0  0  0  0
 29 31  1  0  0  0  0
  8 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0332096

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]12C[C@H]3O[C@]3(C)[C@@H](O)CC\C(C)=C\CC\C(C)=C\C[C@]1(C)C(=O)C(O)=C2[C@H](C)CO

> <INCHI_IDENTIFIER>
InChI=1S/C25H38O5/c1-15-7-6-8-16(2)11-12-24(4)18(21(17(3)14-26)22(28)23(24)29)13-20-25(5,30-20)19(27)10-9-15/h7,11,17-20,26-28H,6,8-10,12-14H2,1-5H3/b15-7+,16-11+/t17-,18-,19+,20-,24+,25-/m1/s1

> <INCHI_KEY>
RIVQZHSDBHHXSZ-JPVLAUDRSA-N

> <FORMULA>
C25H38O5

> <MOLECULAR_WEIGHT>
418.574

> <EXACT_MASS>
418.271924324

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
47.42128646352334

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3R,5R,6S,9E,13E,16S)-6,18-dihydroxy-19-[(2S)-1-hydroxypropan-2-yl]-5,9,13,16-tetramethyl-4-oxatricyclo[14.3.0.0^{3,5}]nonadeca-9,13,18-trien-17-one

> <JCHEM_LOGP>
3.620198372999999

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.90198396159274

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.09522971390276

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6116858987779468

> <JCHEM_POLAR_SURFACE_AREA>
90.29

> <JCHEM_REFRACTIVITY>
120.74109999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3R,5R,6S,9E,13E,16S)-6,18-dihydroxy-19-[(2S)-1-hydroxypropan-2-yl]-5,9,13,16-tetramethyl-4-oxatricyclo[14.3.0.0^{3,5}]nonadeca-9,13,18-trien-17-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-NOV-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-NOV-23         0                                  
HETATM    1  O   UNK     0       9.295  -1.383   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       8.058  -2.300   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.589  -1.838   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.099  -0.378   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.119   0.776   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       6.629   2.236   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       4.590  -0.072   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.695  -3.092   0.000  0.00  0.00           C+0
HETATM    9  H   UNK     0       4.778  -1.855   0.000  0.00  0.00           H+0
HETATM   10  C   UNK     0       6.612  -4.330   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.072  -3.840   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       9.327  -4.733   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       7.529  -5.567   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.719  -5.584   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.838  -7.265   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.600  -8.182   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.188  -7.569   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.776  -9.712   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.538 -10.629   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.126 -10.016   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.950  -8.486   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.412  -7.017   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.538  -7.872   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.362  -6.342   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.600  -5.426   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       3.012  -6.039   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       1.424  -3.896   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.106  -4.071   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.662  -2.979   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       1.249  -2.366   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       4.235  -3.582   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   11                                                  
CONECT    3    2    4    8                                                  
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5                                                            
CONECT    7    4                                                            
CONECT    8    3    9   10   31                                             
CONECT    9    8                                                            
CONECT   10    8   11   13   14                                             
CONECT   11   10    2   12                                                  
CONECT   12   11                                                            
CONECT   13   10                                                            
CONECT   14   10   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29   30                                             
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29   27                                                       
CONECT   31   29    8                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₈O₅

Average Mass

418.5740 Da

Monoisotopic Mass

418.27192 Da

IUPAC Name

(1R,3R,5R,6S,9E,13E,16S)-6,18-dihydroxy-19-[(2S)-1-hydroxypropan-2-yl]-5,9,13,16-tetramethyl-4-oxatricyclo[14.3.0.0^{3,5}]nonadeca-9,13,18-trien-17-one

Traditional Name

(1R,3R,5R,6S,9E,13E,16S)-6,18-dihydroxy-19-[(2S)-1-hydroxypropan-2-yl]-5,9,13,16-tetramethyl-4-oxatricyclo[14.3.0.0^{3,5}]nonadeca-9,13,18-trien-17-one

CAS Registry Number

Not Available

SMILES

[H][C@]12C[C@H]3O[C@]3(C)[C@@H](O)CC\C(C)=C\CC\C(C)=C\C[C@]1(C)C(=O)C(O)=C2[C@H](C)CO

InChI Identifier

InChI=1S/C25H38O5/c1-15-7-6-8-16(2)11-12-24(4)18(21(17(3)14-26)22(28)23(24)29)13-20-25(5,30-20)19(27)10-9-15/h7,11,17-20,26-28H,6,8-10,12-14H2,1-5H3/b15-7+,16-11+/t17-,18-,19+,20-,24+,25-/m1/s1

InChI Key

RIVQZHSDBHHXSZ-JPVLAUDRSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D_DEPT NMR	¹³C NMR Spectrum (1D, 101 MHz, CD3OD, experimental)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2024-05-04	View Spectrum
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2023-11-02	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2023-11-02	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2023-11-02	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2023-11-02	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CD3OD, experimental)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2023-11-02	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CD3OD, experimental)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2023-11-02	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 400, CD₃OD, simulated)	791009327@qq.com	School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology	Zhengyi Shi	2024-05-04	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
maydis		Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as sesterterpenoids. These are terpenes composed of five consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesterterpenoids

Direct Parent

Sesterterpenoids

Alternative Parents

Substituents

Sesterterpenoid
Long chain fatty alcohol
Fatty alcohol
Fatty acyl
Alpha-branched alpha,beta-unsaturated-ketone
Alpha,beta-unsaturated ketone
Enone
Alpha-hydroxy ketone
Acryloyl-group
Secondary alcohol
Ketone
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.62	ChemAxon
pKa (Strongest Acidic)	9.1	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	90.29 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	120.74 m³·mol⁻¹	ChemAxon
Polarizability	47.42 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for maydistacin D (NP0332096)

MOL for NP0332096 (maydistacin D)

3D MOL for NP0332096 (maydistacin D)

3D SDF for NP0332096 (maydistacin D)

3D-SDF for NP0332096 (maydistacin D)

PDB for NP0332096 (maydistacin D)

3D PDB for NP0332096 (maydistacin D)

SMILES for NP0332096 (maydistacin D)

INCHI for NP0332096 (maydistacin D)

Structure for NP0332096 (maydistacin D)

3D Structure for NP0332096 (maydistacin D)