NP-MRD: Showing NP-Card for Nardoinonediol (NP0331992)

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Record Information

Version

2.0

Created at

2023-10-17 16:18:34 UTC

Updated at

2025-02-11 15:45:09 UTC

NP-MRD ID

NP0331992

Natural Product DOI

https://doi.org/10.57994/1113

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Nardoinonediol

Description

Tetrahydronardosinon belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Nardoinonediol was first documented in 2005 (PMID: 16122816). Based on a literature review very few articles have been published on Tetrahydronardosinon (PMID: 37714249).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 43  0  0  0  0  0  0  0  0999 V2000
   -1.4451   -1.9670   -1.6522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4027   -1.2649   -0.2926 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8621   -1.0002    0.0966 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8943   -0.3478    1.4620 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0457    0.8624    1.5001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0312    1.0077    0.6669 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1869    2.2225    0.7111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4498    3.0900    1.5819 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9250    2.4453   -0.2084 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3984    1.2272   -0.9331 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7935    1.2490   -0.9091 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -0.0798   -0.4516 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6048   -0.7260    0.6202 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0133   -1.0150    0.1188 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8213    0.1305    1.8640 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1135   -1.9169    1.0872 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6568    0.0215   -0.3418 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1068    0.6275   -1.6927 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5464   -1.8051   -2.2515 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3829   -1.6840   -2.1703 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5244   -3.0717   -1.4963 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0814   -2.0084    0.4233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4453   -0.4991   -0.6632 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3280   -2.0156    0.2347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5043   -1.0698    2.2075 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9429   -0.0950    1.6839 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2628    1.6266    2.2155 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5878    3.2415   -0.9343 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7643    2.9867    0.3281 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1643    1.3760   -2.0319 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1188    2.1656   -0.7843 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9484   -0.7639   -1.3559 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3445   -2.0197    0.4527 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7682   -0.3058    0.5138 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0377   -1.0664   -1.0010 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5652   -0.4111    2.5290 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9297    0.2272    2.4813 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3487    1.0792    1.6356 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6591   -2.7000    0.9152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4414    0.2166   -2.4952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1219    0.3237   -1.9644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0682    1.7067   -1.6997 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 13 16  1  1
 12 17  1  0
 17 18  1  6
 17  2  1  0
 17  6  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  1
  3 23  1  0
  3 24  1  0
  4 25  1  0
  4 26  1  0
  5 27  1  0
  9 28  1  0
  9 29  1  0
 10 30  1  6
 11 31  1  0
 12 32  1  6
 14 33  1  0
 14 34  1  0
 14 35  1  0
 15 36  1  0
 15 37  1  0
 15 38  1  0
 16 39  1  0
 18 40  1  0
 18 41  1  0
 18 42  1  0
M  END


  Mrv1652304282210242D          

 18 19  0  0  1  0            999 V2000
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6039   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2539   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  4 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 12 15  1  0  0  0  0
 10 16  1  1  0  0  0
  4 17  1  6  0  0  0
  3 18  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0331992

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CCC=C2C(=O)C[C@@H](O)[C@@H](C(C)(C)O)[C@@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O3/c1-9-6-5-7-10-11(16)8-12(17)13(14(2,3)18)15(9,10)4/h7,9,12-13,17-18H,5-6,8H2,1-4H3/t9-,12-,13+,15+/m1/s1

> <INCHI_KEY>
DBDGFZLAYDIKSV-JWFUOXDNSA-N

> <FORMULA>
C15H24O3

> <MOLECULAR_WEIGHT>
252.354

> <EXACT_MASS>
252.172544633

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
28.08996438703335

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,4S,4aR,5R)-3-hydroxy-4-(2-hydroxypropan-2-yl)-4a,5-dimethyl-1,2,3,4,4a,5,6,7-octahydronaphthalen-1-one

> <ALOGPS_LOGP>
2.22

> <JCHEM_LOGP>
1.617256546333333

> <ALOGPS_LOGS>
-2.14

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.222156143234788

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.449874717778254

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8171793682407955

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
71.5439

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.85e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,4S,4aR,5R)-3-hydroxy-4-(2-hydroxypropan-2-yl)-4a,5-dimethyl-2,3,4,5,6,7-hexahydronaphthalen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 28-APR-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   28-APR-22         0                                  
HETATM    1  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667  -6.160   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.127  -4.620   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.207  -4.620   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.334  -3.850   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5   11   17                                             
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   16                                                  
CONECT   11   10    4   12                                                  
CONECT   12   11   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12                                                            
CONECT   16   10                                                            
CONECT   17    4                                                            
CONECT   18    3                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O₃

Average Mass

252.3540 Da

Monoisotopic Mass

252.17254 Da

IUPAC Name

(3R,4S,4aR,5R)-3-hydroxy-4-(2-hydroxypropan-2-yl)-4a,5-dimethyl-1,2,3,4,4a,5,6,7-octahydronaphthalen-1-one

Traditional Name

(3R,4S,4aR,5R)-3-hydroxy-4-(2-hydroxypropan-2-yl)-4a,5-dimethyl-2,3,4,5,6,7-hexahydronaphthalen-1-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1CCC=C2C(=O)C[C@@H](O)[C@@H](C(C)(C)O)[C@@]12C

InChI Identifier

InChI=1S/C15H24O3/c1-9-6-5-7-10-11(16)8-12(17)13(14(2,3)18)15(9,10)4/h7,9,12-13,17-18H,5-6,8H2,1-4H3/t9-,12-,13+,15+/m1/s1

InChI Key

DBDGFZLAYDIKSV-JWFUOXDNSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CD3OD, experimental)	wuhonghua2011@tjutcm.edu.cn	Tianjin University of Traditional Chinese Medicine	Hong-Hua Wu	2024-05-09	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	wuhonghua2011@tjutcm.edu.cn	Tianjin University of Traditional Chinese Medicine	Hong-Hua Wu	2024-05-09	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, CDCl3, experimental)	wuhonghua2011@tjutcm.edu.cn	Tianjin University of Traditional Chinese Medicine	Hong-Hua Wu	2024-05-09	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CD3OD, experimental)	wuhonghua2011@tjutcm.edu.cn	Tianjin University of Traditional Chinese Medicine	Hong-Hua Wu	2024-05-09	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 600, CDCl₃, simulated)	wuhonghua2011@tjutcm.edu.cn	Tianjin University of Traditional Chinese Medicine	Hong-Hua Wu	2024-05-09	View Spectrum

Species

Species of Origin

Species Name	Source	Reference
Tagetes erecta		Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Nardosinane sesquiterpenoid
Sesquiterpenoid
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.22	ALOGPS
logP	1.62	ChemAxon
logS	-2.1	ALOGPS
pKa (Strongest Acidic)	14.45	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	71.54 m³·mol⁻¹	ChemAxon
Polarizability	28.09 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00021036

Chemspider ID

34526576

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12313520

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Romero MR, Efferth T, Serrano MA, Castano B, Macias RI, Briz O, Marin JJ: Effect of artemisinin/artesunate as inhibitors of hepatitis B virus production in an "in vitro" replicative system. Antiviral Res. 2005 Nov;68(2):75-83. doi: 10.1016/j.antiviral.2005.07.005. Epub 2005 Aug 10. [PubMed:16122816 ]
Wang X, Liu X, Wang X, Wang H, Zhang LH, Yu H, Yang W, Wu HH: Carotenoid-derived norsesquiterpenoids and sesquiterpenoids from Tagetes erecta L. Phytochemistry. 2023 Nov;215:113860. doi: 10.1016/j.phytochem.2023.113860. Epub 2023 Sep 14. [PubMed:37714249 ]
DOI: 10.1016/j.phytochem.2023.113860
PII: s0031942223002765

Showing NP-Card for Nardoinonediol (NP0331992)

MOL for NP0331992 (Nardoinonediol)

3D MOL for NP0331992 (Nardoinonediol)

3D SDF for NP0331992 (Nardoinonediol)

3D-SDF for NP0331992 (Nardoinonediol)

PDB for NP0331992 (Nardoinonediol)

3D PDB for NP0331992 (Nardoinonediol)

SMILES for NP0331992 (Nardoinonediol)

INCHI for NP0331992 (Nardoinonediol)

Structure for NP0331992 (Nardoinonediol)

3D Structure for NP0331992 (Nardoinonediol)