NP-MRD: Showing NP-Card for Scytalpolyol A (NP0331980)

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Record Information

Version

2.0

Created at

2023-10-14 04:12:04 UTC

Updated at

2024-09-03 04:17:36 UTC

NP-MRD ID

NP0331980

Natural Product DOI

https://doi.org/10.57994/1099

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Scytalpolyol A

Description

Scytalpolyol A belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle. Based on a literature review very few articles have been published on Scytalpolyol A.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 10142304122D          

 28 27  0  0  1  0            999 V2000
   -3.7638    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7638    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4783    0.7145    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1927    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.9072    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362   -0.1105    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0506    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1927    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4783   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6204    0.7145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  6 10  1  0  0  0  0
  4 11  1  6  0  0  0
  3 12  1  1  0  0  0
  2 13  2  0  0  0  0
 14 13  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 19 18  1  0  0  0  0
 20 19  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  1  1  0  0  0
 20 25  1  1  0  0  0
 19 26  1  6  0  0  0
 15 27  1  1  0  0  0
 14 28  1  6  0  0  0
M  END


  Mrv2104 10142304122D          

 28 27  0  0  1  0            999 V2000
   -3.7638    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7638    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4783    0.7145    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1927    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.9072    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3362   -0.1105    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0506    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6217    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1927    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4783   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0493    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6204    0.7145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6204   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3349    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  6 10  1  0  0  0  0
  4 11  1  6  0  0  0
  3 12  1  1  0  0  0
  2 13  2  0  0  0  0
 14 13  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 19 18  1  0  0  0  0
 20 19  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  1  1  0  0  0
 20 25  1  1  0  0  0
 19 26  1  6  0  0  0
 15 27  1  1  0  0  0
 14 28  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0331980

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C(=O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)[C@@H](C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C23H40O4/c1-9-15(3)21(25)17(5)11-19(7)23(27)20(8)12-18(6)22(26)16(4)10-14(2)13-24/h10-13,15-17,20-23,25-27H,9H2,1-8H3/b14-10+,18-12+,19-11+/t15-,16-,17-,20-,21+,22-,23+/m0/s1

> <INCHI_KEY>
ZELXPMBYVACJGK-ZGHFBBAZSA-N

> <FORMULA>
C23H40O4

> <MOLECULAR_WEIGHT>
380.569

> <EXACT_MASS>
380.292659768

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
45.82139321284279

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E,4S,5S,6E,8S,9S,10E,12S,13R,14S)-5,9,13-trihydroxy-2,4,6,8,10,12,14-heptamethylhexadeca-2,6,10-trienal

> <JCHEM_LOGP>
3.8657703786666673

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.83720088956171

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.77283680267507

> <JCHEM_PKA_STRONGEST_BASIC>
-0.512058646209634

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
114.99270000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4S,5S,6E,8S,9S,10E,12S,13R,14S)-5,9,13-trihydroxy-2,4,6,8,10,12,14-heptamethylhexadeca-2,6,10-trienal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 14-OCT-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-OCT-23         0                                  
HETATM    1  C   UNK     0      -7.026   3.644   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.026   2.104   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -8.359   1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -9.693   2.104   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -11.027   1.334   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -12.360   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -13.694   1.334   0.000  0.00  0.00           C+0
HETATM    8  H   UNK     0     -13.694  -0.206   0.000  0.00  0.00           H+0
HETATM    9  O   UNK     0     -15.028   2.104   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0     -12.360   3.644   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -9.693   3.644   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -8.359  -0.206   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -5.692   1.334   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.358   2.104   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.025   1.334   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.691   2.104   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.691   3.644   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.311   2.104   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.644   3.644   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.310  -0.206   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       0.976   3.644   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -3.025  -0.206   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -4.358   3.644   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   13                                                  
CONECT    3    2    4   12                                                  
CONECT    4    3    5   11                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   10                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    6                                                            
CONECT   11    4                                                            
CONECT   12    3                                                            
CONECT   13    2   14                                                       
CONECT   14   13   15   28                                                  
CONECT   15   14   16   27                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   26                                                  
CONECT   20   19   21   25                                                  
CONECT   21   20   22   24                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21                                                            
CONECT   25   20                                                            
CONECT   26   19                                                            
CONECT   27   15                                                            
CONECT   28   14                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₄₀O₄

Average Mass

380.5690 Da

Monoisotopic Mass

380.29266 Da

IUPAC Name

(2E,4S,5S,6E,8S,9S,10E,12S,13R,14S)-5,9,13-trihydroxy-2,4,6,8,10,12,14-heptamethylhexadeca-2,6,10-trienal

Traditional Name

(2E,4S,5S,6E,8S,9S,10E,12S,13R,14S)-5,9,13-trihydroxy-2,4,6,8,10,12,14-heptamethylhexadeca-2,6,10-trienal

CAS Registry Number

Not Available

SMILES

[H]C(=O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)[C@@H](C)CC

InChI Identifier

InChI=1S/C23H40O4/c1-9-15(3)21(25)17(5)11-19(7)23(27)20(8)12-18(6)22(26)16(4)10-14(2)13-24/h10-13,15-17,20-23,25-27H,9H2,1-8H3/b14-10+,18-12+,19-11+/t15-,16-,17-,20-,21+,22-,23+/m0/s1

InChI Key

ZELXPMBYVACJGK-ZGHFBBAZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Acyclic diterpenoids

Alternative Parents

Substituents

Acyclic diterpenoid
Fatty aldehyde
Fatty acyl
Enal
Alpha,beta-unsaturated aldehyde
Secondary alcohol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aldehyde
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.87	ChemAxon
pKa (Strongest Acidic)	18.77	ChemAxon
pKa (Strongest Basic)	-0.51	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	114.99 m³·mol⁻¹	ChemAxon
Polarizability	45.82 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Scytalpolyol A (NP0331980)

MOL for NP0331980 (Scytalpolyol A)

3D MOL for NP0331980 (Scytalpolyol A)

3D SDF for NP0331980 (Scytalpolyol A)

3D-SDF for NP0331980 (Scytalpolyol A)

PDB for NP0331980 (Scytalpolyol A)

3D PDB for NP0331980 (Scytalpolyol A)

SMILES for NP0331980 (Scytalpolyol A)

INCHI for NP0331980 (Scytalpolyol A)

Structure for NP0331980 (Scytalpolyol A)

3D Structure for NP0331980 (Scytalpolyol A)