NP-MRD: Showing NP-Card for Scytalpolyol C (NP0331978)

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Record Information

Version

2.0

Created at

2023-10-14 04:05:18 UTC

Updated at

2024-09-03 04:17:35 UTC

NP-MRD ID

NP0331978

Natural Product DOI

https://doi.org/10.57994/1097

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Scytalpolyol C

Description

Scytalpolyol C belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle. Based on a literature review very few articles have been published on Scytalpolyol C.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 10142304052D          

 32 31  0  0  1  0            999 V2000
    3.9039    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0974    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8118    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5263    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2408    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9552    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6697    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3842    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0987    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0987    0.6039    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8131    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3842    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9552    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2408    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5263    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  8  7  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 15 19  1  0  0  0  0
 13 20  1  6  0  0  0
 12 21  1  1  0  0  0
 11 22  1  0  0  0  0
  9 23  1  6  0  0  0
  8 24  1  1  0  0  0
  7 25  1  0  0  0  0
  5 26  1  6  0  0  0
  4 27  1  1  0  0  0
  3 28  1  1  0  0  0
  2 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 29 32  1  1  0  0  0
M  END


  Mrv2104 10142304052D          

 32 31  0  0  1  0            999 V2000
    3.9039    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1895    1.8414    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4750    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7605    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0461    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0974    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8118    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5263    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2408    1.4289    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9552    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6697    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3842    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0987    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0987    0.6039    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8131    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3842    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9552    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2408    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5263    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0974    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3829    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3316    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7605    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    1.8414    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3329    1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184    2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  8  7  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 12 11  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 15 19  1  0  0  0  0
 13 20  1  6  0  0  0
 12 21  1  1  0  0  0
 11 22  1  0  0  0  0
  9 23  1  6  0  0  0
  8 24  1  1  0  0  0
  7 25  1  0  0  0  0
  5 26  1  6  0  0  0
  4 27  1  1  0  0  0
  3 28  1  1  0  0  0
  2 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 29 32  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0331978

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C(=O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C26H46O5/c1-10-16(3)25(30)22(9)26(31)21(8)13-20(7)24(29)19(6)12-18(5)23(28)17(4)11-15(2)14-27/h11-14,16-17,19,21-26,28-31H,10H2,1-9H3/b15-11+,18-12+,20-13+/t16-,17-,19-,21-,22-,23-,24-,25-,26-/m0/s1

> <INCHI_KEY>
MGXDGPSNTNUBFJ-OYUBUHTBSA-N

> <FORMULA>
C26H46O5

> <MOLECULAR_WEIGHT>
438.649

> <EXACT_MASS>
438.334524581

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
52.60993506893382

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,4S,5S,6E,8S,9S,10E,12S,13S,14S,15S,16S)-5,9,13,15-tetrahydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6,10-trienal

> <JCHEM_LOGP>
3.7747187350000013

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.001650045830567

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.300368744976105

> <JCHEM_PKA_STRONGEST_BASIC>
-0.8331271120297289

> <JCHEM_POLAR_SURFACE_AREA>
97.99000000000001

> <JCHEM_REFRACTIVITY>
130.237

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4S,5S,6E,8S,9S,10E,12S,13S,14S,15S,16S)-5,9,13,15-tetrahydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6,10-trienal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 14-OCT-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-OCT-23         0                                  
HETATM    1  O   UNK     0       7.287   1.127   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       7.287   2.667   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.954   3.437   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.620   2.667   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.286   3.437   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.953   2.667   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.619   3.437   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.715   2.667   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.048   3.437   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -3.382   2.667   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.716   3.437   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -6.049   2.667   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -7.383   3.437   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -8.717   2.667   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -10.050   3.437   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -11.384   2.667   0.000  0.00  0.00           C+0
HETATM   17  H   UNK     0     -11.384   1.127   0.000  0.00  0.00           H+0
HETATM   18  O   UNK     0     -12.718   3.437   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0     -10.050   4.977   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -7.383   4.977   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -6.049   1.127   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -4.716   4.977   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -2.048   4.977   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -0.715   1.127   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.619   4.977   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.286   4.977   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       4.620   1.127   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       5.954   4.977   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.621   3.437   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       9.955   2.667   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      11.288   3.437   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       8.621   4.977   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   29                                                  
CONECT    3    2    4   28                                                  
CONECT    4    3    5   27                                                  
CONECT    5    4    6   26                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   25                                                  
CONECT    8    7    9   24                                                  
CONECT    9    8   10   23                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   22                                                  
CONECT   12   11   13   21                                                  
CONECT   13   12   14   20                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   19                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   15                                                            
CONECT   20   13                                                            
CONECT   21   12                                                            
CONECT   22   11                                                            
CONECT   23    9                                                            
CONECT   24    8                                                            
CONECT   25    7                                                            
CONECT   26    5                                                            
CONECT   27    4                                                            
CONECT   28    3                                                            
CONECT   29    2   30   32                                                  
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32   29                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₄₆O₅

Average Mass

438.6490 Da

Monoisotopic Mass

438.33452 Da

IUPAC Name

(2E,4S,5S,6E,8S,9S,10E,12S,13S,14S,15S,16S)-5,9,13,15-tetrahydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6,10-trienal

Traditional Name

(2E,4S,5S,6E,8S,9S,10E,12S,13S,14S,15S,16S)-5,9,13,15-tetrahydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6,10-trienal

CAS Registry Number

Not Available

SMILES

[H]C(=O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)CC

InChI Identifier

InChI=1S/C26H46O5/c1-10-16(3)25(30)22(9)26(31)21(8)13-20(7)24(29)19(6)12-18(5)23(28)17(4)11-15(2)14-27/h11-14,16-17,19,21-26,28-31H,10H2,1-9H3/b15-11+,18-12+,20-13+/t16-,17-,19-,21-,22-,23-,24-,25-,26-/m0/s1

InChI Key

MGXDGPSNTNUBFJ-OYUBUHTBSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Acyclic diterpenoids

Alternative Parents

Substituents

Acyclic diterpenoid
Fatty aldehyde
Fatty acyl
Enal
Alpha,beta-unsaturated aldehyde
Secondary alcohol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aldehyde
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.77	ChemAxon
pKa (Strongest Acidic)	14.3	ChemAxon
pKa (Strongest Basic)	-0.83	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	97.99 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	130.24 m³·mol⁻¹	ChemAxon
Polarizability	52.61 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

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Wikipedia Link

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METLIN ID

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PubChem Compound

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PDB ID

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ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Showing NP-Card for Scytalpolyol C (NP0331978)

MOL for NP0331978 (Scytalpolyol C)

3D MOL for NP0331978 (Scytalpolyol C)

3D SDF for NP0331978 (Scytalpolyol C)

3D-SDF for NP0331978 (Scytalpolyol C)

PDB for NP0331978 (Scytalpolyol C)

3D PDB for NP0331978 (Scytalpolyol C)

SMILES for NP0331978 (Scytalpolyol C)

INCHI for NP0331978 (Scytalpolyol C)

Structure for NP0331978 (Scytalpolyol C)

3D Structure for NP0331978 (Scytalpolyol C)