NP-MRD: Showing NP-Card for Scytalpolyol D (NP0331977)

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Record Information

Version

2.0

Created at

2023-10-14 04:02:23 UTC

Updated at

2024-09-03 04:17:35 UTC

NP-MRD ID

NP0331977

Natural Product DOI

https://doi.org/10.57994/1096

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Scytalpolyol D

Description

Scytalpolyol D belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle. Based on a literature review very few articles have been published on Scytalpolyol D.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 10142304022D          

 31 30  0  0  1  0            999 V2000
    2.8066    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921    2.8579    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3776    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6632    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7658    2.0329    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4802    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0513    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3776    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  6 10  1  0  0  0  0
  4 11  1  6  0  0  0
  3 12  1  1  0  0  0
  2 13  2  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  0  0  0  0
 19 18  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 22 21  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  1  1  0  0  0
 20 26  1  1  0  0  0
 19 27  1  1  0  0  0
 18 28  1  6  0  0  0
 16 29  1  1  0  0  0
 15 30  1  1  0  0  0
 14 31  1  6  0  0  0
M  END


  Mrv2104 10142304022D          

 31 30  0  0  1  0            999 V2000
    2.8066    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8066    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921    2.8579    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3776    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6632    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0513    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7658    2.0329    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4802    3.2704    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0513    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3776    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0921    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5211    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9500    2.8579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6645    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.3789    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    3.2704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.8079    2.8579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5224    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.2368    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    3.2704    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.6658    2.8579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3802    3.2704    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9513    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5224    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8079    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0934    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6645    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9500    2.0329    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2355    4.0954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  6 10  1  0  0  0  0
  4 11  1  6  0  0  0
  3 12  1  1  0  0  0
  2 13  2  0  0  0  0
 14 13  1  0  0  0  0
 15 14  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 18 17  1  0  0  0  0
 19 18  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 22 21  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  1  1  0  0  0
 20 26  1  1  0  0  0
 19 27  1  1  0  0  0
 18 28  1  6  0  0  0
 16 29  1  1  0  0  0
 15 30  1  1  0  0  0
 14 31  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0331977

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]C(=O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)[C@@H](C)C[C@H](C)[C@H](O)[C@@H](C)C[C@@H](C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C26H48O4/c1-10-16(2)11-18(4)24(28)20(6)13-22(8)26(30)23(9)14-21(7)25(29)19(5)12-17(3)15-27/h12,14-16,18-20,22-26,28-30H,10-11,13H2,1-9H3/b17-12+,21-14+/t16-,18-,19-,20-,22-,23-,24+,25-,26+/m0/s1

> <INCHI_KEY>
NBLSFSZMSXSHLA-HPDQLOPGSA-N

> <FORMULA>
C26H48O4

> <MOLECULAR_WEIGHT>
424.666

> <EXACT_MASS>
424.355260026

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
78

> <JCHEM_AVERAGE_POLARIZABILITY>
51.86898995094482

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E,4S,5S,6E,8S,9R,10S,12S,13R,14S,16S)-5,9,13-trihydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6-dienal

> <JCHEM_LOGP>
5.369552556333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.572956717244445

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.837207674979364

> <JCHEM_PKA_STRONGEST_BASIC>
-0.38637174819774334

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
127.9703

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2E,4S,5S,6E,8S,9R,10S,12S,13R,14S,16S)-5,9,13-trihydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6-dienal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 14-OCT-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   14-OCT-23         0                                  
HETATM    1  C   UNK     0       5.239   7.645   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.239   6.105   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.905   5.335   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.572   6.105   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.238   5.335   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.096   6.105   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.429   5.335   0.000  0.00  0.00           C+0
HETATM    8  H   UNK     0      -1.429   3.795   0.000  0.00  0.00           H+0
HETATM    9  O   UNK     0      -2.763   6.105   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -0.096   7.645   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.572   7.645   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       3.905   3.795   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.573   5.335   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.906   6.105   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.240   5.335   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.574   6.105   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      11.907   5.335   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.241   6.105   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      14.575   5.335   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      15.908   6.105   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      17.242   5.335   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      18.576   6.105   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      19.909   5.335   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      21.243   6.105   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      18.576   7.645   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      15.908   7.645   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      14.575   3.795   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      13.241   7.645   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.574   7.645   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       9.240   3.795   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       7.906   7.645   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   13                                                  
CONECT    3    2    4   12                                                  
CONECT    4    3    5   11                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   10                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    6                                                            
CONECT   11    4                                                            
CONECT   12    3                                                            
CONECT   13    2   14                                                       
CONECT   14   13   15   31                                                  
CONECT   15   14   16   30                                                  
CONECT   16   15   17   29                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   28                                                  
CONECT   19   18   20   27                                                  
CONECT   20   19   21   26                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23                                                            
CONECT   25   22                                                            
CONECT   26   20                                                            
CONECT   27   19                                                            
CONECT   28   18                                                            
CONECT   29   16                                                            
CONECT   30   15                                                            
CONECT   31   14                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₄₈O₄

Average Mass

424.6660 Da

Monoisotopic Mass

424.35526 Da

IUPAC Name

(2E,4S,5S,6E,8S,9R,10S,12S,13R,14S,16S)-5,9,13-trihydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6-dienal

Traditional Name

(2E,4S,5S,6E,8S,9R,10S,12S,13R,14S,16S)-5,9,13-trihydroxy-2,4,6,8,10,12,14,16-octamethyloctadeca-2,6-dienal

CAS Registry Number

Not Available

SMILES

[H]C(=O)C(\C)=C\[C@H](C)[C@H](O)C(\C)=C\[C@H](C)[C@H](O)[C@@H](C)C[C@H](C)[C@H](O)[C@@H](C)C[C@@H](C)CC

InChI Identifier

InChI=1S/C26H48O4/c1-10-16(2)11-18(4)24(28)20(6)13-22(8)26(30)23(9)14-21(7)25(29)19(5)12-17(3)15-27/h12,14-16,18-20,22-26,28-30H,10-11,13H2,1-9H3/b17-12+,21-14+/t16-,18-,19-,20-,22-,23-,24+,25-,26+/m0/s1

InChI Key

NBLSFSZMSXSHLA-HPDQLOPGSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	jrivera@iquimica.unam.mx	Not Available	Not Available	2023-10-14	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

This compound belongs to the class of organic compounds known as acyclic diterpenoids. These are diterpenoids (compounds made of four consecutive isoprene units) that do not contain a cycle.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Acyclic diterpenoids

Alternative Parents

Substituents

Acyclic diterpenoid
Fatty aldehyde
Fatty acyl
Enal
Alpha,beta-unsaturated aldehyde
Secondary alcohol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aldehyde
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.37	ChemAxon
pKa (Strongest Acidic)	18.84	ChemAxon
pKa (Strongest Basic)	-0.39	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	127.97 m³·mol⁻¹	ChemAxon
Polarizability	51.87 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Scytalpolyol D (NP0331977)

MOL for NP0331977 (Scytalpolyol D)

3D MOL for NP0331977 (Scytalpolyol D)

3D SDF for NP0331977 (Scytalpolyol D)

3D-SDF for NP0331977 (Scytalpolyol D)

PDB for NP0331977 (Scytalpolyol D)

3D PDB for NP0331977 (Scytalpolyol D)

SMILES for NP0331977 (Scytalpolyol D)

INCHI for NP0331977 (Scytalpolyol D)

Structure for NP0331977 (Scytalpolyol D)

3D Structure for NP0331977 (Scytalpolyol D)