NP-MRD: Showing NP-Card for kitrinomycin A (NP0331891)

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Record Information

Version

2.0

Created at

2023-09-27 04:04:14 UTC

Updated at

2024-09-03 04:17:19 UTC

NP-MRD ID

NP0331891

Natural Product DOI

https://doi.org/10.57994/0997

Secondary Accession Numbers

None

Natural Product Identification

Common Name

kitrinomycin A

Description

kitrinomycin A was first documented in 2023 (PMID: 37737825). Based on a literature review very few articles have been published on kitrinomycin A.

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 09272304042D          

 24 26  0  0  0  0            999 V2000
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -1.4924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6119   -2.2771    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6669   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0794   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0794   -1.5395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -0.1576    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  5  8  2  0  0  0  0
  4  9  2  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 17 21  1  0  0  0  0
 13 21  1  0  0  0  0
 14 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 11 24  1  0  0  0  0
  2 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0331891

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=C(O)C2=CC3=C(C(O)=C(O3)C(C)=O)C(O)=C2C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C15H10O9/c1-4(16)12-11(19)8-6(23-12)3-5-7(10(8)18)14(20)24-13(9(5)17)15(21)22-2/h3,17-19H,1-2H3

> <INCHI_KEY>
SNEAVGILQVWLCL-UHFFFAOYSA-N

> <FORMULA>
C15H10O9

> <MOLECULAR_WEIGHT>
334.236

> <EXACT_MASS>
334.032481902

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
31.01125208906356

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 2-acetyl-3,4,8-trihydroxy-5-oxo-5H-furo[2,3-g]isochromene-7-carboxylate

> <JCHEM_LOGP>
1.6363387203333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.2024562282756985

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.251183308249446

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9372449094351634

> <JCHEM_POLAR_SURFACE_AREA>
143.5

> <JCHEM_REFRACTIVITY>
78.53589999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl 2-acetyl-3,4,8-trihydroxy-5-oxofuro[2,3-g]isochromene-7-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 27-SEP-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   27-SEP-23         0                                  
HETATM    1  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.000   1.540   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.133  -2.786   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.609  -4.251   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       9.038  -1.540   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.578  -1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.348  -0.206   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      11.348  -2.874   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       8.133  -0.294   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   24                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    9                                                  
CONECT    5    4    6    8                                                  
CONECT    6    5    7                                                       
CONECT    7    6                                                            
CONECT    8    5                                                            
CONECT    9    4   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   24                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   21                                                  
CONECT   14   13   15   22                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   21                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
CONECT   21   17   13                                                       
CONECT   22   14   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   11    2                                                  
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₀O₉

Average Mass

334.2360 Da

Monoisotopic Mass

334.03248 Da

IUPAC Name

methyl 2-acetyl-3,4,8-trihydroxy-5-oxo-5H-furo[2,3-g]isochromene-7-carboxylate

Traditional Name

methyl 2-acetyl-3,4,8-trihydroxy-5-oxofuro[2,3-g]isochromene-7-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C(O)C2=CC3=C(C(O)=C(O3)C(C)=O)C(O)=C2C(=O)O1

InChI Identifier

InChI=1S/C15H10O9/c1-4(16)12-11(19)8-6(23-12)3-5-7(10(8)18)14(20)24-13(9(5)17)15(21)22-2/h3,17-19H,1-2H3

InChI Key

SNEAVGILQVWLCL-UHFFFAOYSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
ROESY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	andrew.piggott@mq.edu.au	Not Available	Not Available	2023-09-27	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	andrew.piggott@mq.edu.au	Not Available	Not Available	2023-09-27	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, CDCl3, experimental)	andrew.piggott@mq.edu.au	Not Available	Not Available	2023-09-27	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	andrew.piggott@mq.edu.au	Not Available	Not Available	2023-09-27	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 600 MHz, CDCl3, experimental)	andrew.piggott@mq.edu.au	Not Available	Not Available	2023-09-27	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, CDCl3, experimental)	andrew.piggott@mq.edu.au	Not Available	Not Available	2023-09-27	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.64	ChemAxon
pKa (Strongest Acidic)	4.25	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	143.5 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	78.54 m³·mol⁻¹	ChemAxon
Polarizability	31.01 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Cowled MS, Kalaitzis JA, Crombie A, Chen R, Sbaraini N, Lacey E, Piggott AM: Fungal Duel between Penicillium brasilianum and Aspergillus nomius Results in Dual Induction of Miktospiromide A and Kitrinomycin A. J Nat Prod. 2023 Oct 27;86(10):2398-2406. doi: 10.1021/acs.jnatprod.3c00593. Epub 2023 Sep 22. [PubMed:37737825 ]

Showing NP-Card for kitrinomycin A (NP0331891)

MOL for NP0331891 (kitrinomycin A)

3D MOL for NP0331891 (kitrinomycin A)

3D SDF for NP0331891 (kitrinomycin A)

3D-SDF for NP0331891 (kitrinomycin A)

PDB for NP0331891 (kitrinomycin A)

3D PDB for NP0331891 (kitrinomycin A)

SMILES for NP0331891 (kitrinomycin A)

INCHI for NP0331891 (kitrinomycin A)

Structure for NP0331891 (kitrinomycin A)

3D Structure for NP0331891 (kitrinomycin A)