NP-MRD: Showing NP-Card for Epi-neocyathin O (NP0331842)

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Record Information

Version

1.0

Created at

2023-09-26 16:07:50 UTC

Updated at

2024-04-19 09:53:24 UTC

NP-MRD ID

NP0331842

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Epi-neocyathin O

Description

Not Available

Structure

MOL SDF PDB SMILES InChI


  Mrv2104 09262316072D          

 26 29  0  0  1  0            999 V2000
    4.1324    2.9752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5542    2.3867    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7555    2.5931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7748    1.5917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2613    0.9460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7167    0.2581    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5117    0.4787    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1574   -0.0348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5476    1.3029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2416   -0.3784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3487   -0.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5253   -0.5307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0698    0.1572    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7580   -0.6066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4378    0.8955    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6129    0.9067    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0900    1.6436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2883    1.8381    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6363    1.3326    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1020    1.7006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7899    1.2452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6251    0.5076    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1230    0.1598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2631   -0.0155    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0686   -0.8172    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0440    0.9145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  6  5  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  4  9  1  0  0  0  0
  6 10  1  1  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
 13 12  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
 15  5  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 18 17  1  0  0  0  0
 19 18  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 22 19  1  0  0  0  0
 22 23  1  6  0  0  0
 24 22  1  0  0  0  0
 13 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 18 26  1  6  0  0  0
M  END


  Mrv2104 09262316072D          

 26 29  0  0  1  0            999 V2000
    4.1324    2.9752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5542    2.3867    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7555    2.5931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7748    1.5917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2613    0.9460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7167    0.2581    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5117    0.4787    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1574   -0.0348    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5476    1.3029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2416   -0.3784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3487   -0.4803    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5253   -0.5307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0698    0.1572    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7580   -0.6066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4378    0.8955    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6129    0.9067    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0900    1.6436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2883    1.8381    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6363    1.3326    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1020    1.7006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7899    1.2452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6251    0.5076    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1230    0.1598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2631   -0.0155    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0686   -0.8172    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0440    0.9145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  6  5  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  4  9  1  0  0  0  0
  6 10  1  1  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
 13 12  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
 15  5  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 18 17  1  0  0  0  0
 19 18  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
 22 19  1  0  0  0  0
 22 23  1  6  0  0  0
 24 22  1  0  0  0  0
 13 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 18 26  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0331842

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H][C@]12C[C@H]3O[C@](O)([C@H](O)[C@@H]3CO)[C@]1(C)CC[C@@]1(C)[C@@H](O)CC(C(C)C)=C21

> <INCHI_IDENTIFIER>
InChI=1S/C20H32O5/c1-10(2)11-7-15(22)18(3)5-6-19(4)13(16(11)18)8-14-12(9-21)17(23)20(19,24)25-14/h10,12-15,17,21-24H,5-9H2,1-4H3/t12-,13-,14-,15+,17-,18+,19-,20-/m1/s1

> <INCHI_KEY>
RTSYRMMOOCKYRH-STSORGEZSA-N

> <FORMULA>
C20H32O5

> <MOLECULAR_WEIGHT>
352.471

> <EXACT_MASS>
352.22497413

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
39.02803986134871

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2R,5R,6S,10R,12R,13S,14R)-13-(hydroxymethyl)-2,5-dimethyl-8-(propan-2-yl)-15-oxatetracyclo[10.2.1.0^{2,10}.0^{5,9}]pentadec-8-ene-1,6,14-triol

> <JCHEM_LOGP>
1.115480372

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.692664790986248

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.770577257807423

> <JCHEM_PKA_STRONGEST_BASIC>
-0.8482714909177239

> <JCHEM_POLAR_SURFACE_AREA>
90.15

> <JCHEM_REFRACTIVITY>
93.79169999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5R,6S,10R,12R,13S,14R)-13-(hydroxymethyl)-8-isopropyl-2,5-dimethyl-15-oxatetracyclo[10.2.1.0^{2,10}.0^{5,9}]pentadec-8-ene-1,6,14-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-SEP-23   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-SEP-23         0                                  
HETATM    1  C   UNK     0       7.714   5.554   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.635   4.455   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.144   4.841   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.046   2.971   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.088   1.766   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.938   0.482   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.422   0.894   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       9.627  -0.065   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.489   2.432   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.918  -0.706   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.251  -0.897   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.714  -0.991   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.864   0.293   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.282  -1.132   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.551   1.672   0.000  0.00  0.00           C+0
HETATM   16  H   UNK     0       3.011   1.693   0.000  0.00  0.00           H+0
HETATM   17  C   UNK     0       3.901   3.068   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.405   3.431   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.188   2.487   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.190   3.174   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.475   2.324   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.167   0.948   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -0.230   0.298   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       2.358  -0.029   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       1.995  -1.525   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       1.949   1.707   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    9                                                  
CONECT    5    4    6   15                                                  
CONECT    6    5    7   10   11                                             
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7    4                                                       
CONECT   10    6                                                            
CONECT   11    6   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   24                                             
CONECT   14   13                                                            
CONECT   15   13    5   16   17                                             
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19   26                                                  
CONECT   19   18   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   13   25   26                                             
CONECT   25   24                                                            
CONECT   26   24   18                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂O₅

Average Mass

352.4710 Da

Monoisotopic Mass

352.22497 Da

IUPAC Name

(1S,2R,5R,6S,10R,12R,13S,14R)-13-(hydroxymethyl)-2,5-dimethyl-8-(propan-2-yl)-15-oxatetracyclo[10.2.1.0^{2,10}.0^{5,9}]pentadec-8-ene-1,6,14-triol

Traditional Name

(1S,2R,5R,6S,10R,12R,13S,14R)-13-(hydroxymethyl)-8-isopropyl-2,5-dimethyl-15-oxatetracyclo[10.2.1.0^{2,10}.0^{5,9}]pentadec-8-ene-1,6,14-triol

CAS Registry Number

Not Available

SMILES

[H][C@]12C[C@H]3O[C@](O)([C@H](O)[C@@H]3CO)[C@]1(C)CC[C@@]1(C)[C@@H](O)CC(C(C)C)=C21

InChI Identifier

InChI=1S/C20H32O5/c1-10(2)11-7-15(22)18(3)5-6-19(4)13(16(11)18)8-14-12(9-21)17(23)20(19,24)25-14/h10,12-15,17,21-24H,5-9H2,1-4H3/t12-,13-,14-,15+,17-,18+,19-,20-/m1/s1

InChI Key

RTSYRMMOOCKYRH-STSORGEZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
NOESY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	qjz@nwafu.edu.cn	Not Available	Not Available	2023-09-26	View Spectrum
HMBC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	qjz@nwafu.edu.cn	Not Available	Not Available	2023-09-26	View Spectrum
COSY NMR	[¹H, ¹H] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	qjz@nwafu.edu.cn	Not Available	Not Available	2023-09-26	View Spectrum
HSQC NMR	[¹H, ¹³C] NMR Spectrum (2D, 400 MHz, CD3OD, experimental)	qjz@nwafu.edu.cn	Not Available	Not Available	2023-09-26	View Spectrum
1D NMR	[¹³C, ] NMR Spectrum (2D, 126 MHz, CD3OD, experimental)	qjz@nwafu.edu.cn	Not Available	Not Available	2023-09-26	View Spectrum
1D NMR	[¹H, ] NMR Spectrum (2D, 500 MHz, CD3OD, experimental)	qjz@nwafu.edu.cn	Not Available	Not Available	2023-09-26	View Spectrum

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.12	ChemAxon
pKa (Strongest Acidic)	10.77	ChemAxon
pKa (Strongest Basic)	-0.85	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	90.15 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	93.79 m³·mol⁻¹	ChemAxon
Polarizability	39.03 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

Not Available

Showing NP-Card for Epi-neocyathin O (NP0331842)

MOL for NP0331842 (Epi-neocyathin O)

3D MOL for NP0331842 (Epi-neocyathin O)

3D SDF for NP0331842 (Epi-neocyathin O)

3D-SDF for NP0331842 (Epi-neocyathin O)

PDB for NP0331842 (Epi-neocyathin O)

3D PDB for NP0331842 (Epi-neocyathin O)

SMILES for NP0331842 (Epi-neocyathin O)

INCHI for NP0331842 (Epi-neocyathin O)

Structure for NP0331842 (Epi-neocyathin O)

3D Structure for NP0331842 (Epi-neocyathin O)