Np mrd loader

Record Information
Version2.0
Created at2023-06-28 04:00:38 UTC
Updated at2024-09-03 04:16:33 UTC
NP-MRD IDNP0331701
Natural Product DOIhttps://doi.org/10.57994/0709
Secondary Accession NumbersNone
Natural Product Identification
Common Name2-O-sinapoyl makisterone A
Description2-O-sinapoyl makisterone A belongs to the class of organic compounds known as tetrahydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears four hydroxyl groups. 2-O-sinapoyl makisterone A was first documented in 2023 (PMID: 37530540). Based on a literature review very few articles have been published on 2-O-sinapoyl makisterone A.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC39H56O11
Average Mass700.8660 Da
Monoisotopic Mass700.38226 Da
IUPAC Name(1R,2R,4S,5R,7R,11S,14S,15R)-5,11-dihydroxy-2,15-dimethyl-8-oxo-14-[(2R,3R,5R)-2,3,6-trihydroxy-5,6-dimethylheptan-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-4-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
Traditional Name(1R,2R,4S,5R,7R,11S,14S,15R)-5,11-dihydroxy-2,15-dimethyl-8-oxo-14-[(2R,3R,5R)-2,3,6-trihydroxy-5,6-dimethylheptan-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-9-en-4-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CC[C@@]2(O)C3=CC(=O)[C@]4([H])C[C@@H](O)[C@H](C[C@]4(C)[C@@]3([H])CC[C@]12C)OC(=O)\C=C\C1=CC(OC)=C(O)C(OC)=C1)[C@@](C)(O)[C@H](O)C[C@@H](C)C(C)(C)O
InChI Identifier
InChI=1S/C39H56O11/c1-21(35(2,3)45)15-32(42)38(6,46)31-12-14-39(47)24-18-26(40)25-19-27(41)30(20-36(25,4)23(24)11-13-37(31,39)5)50-33(43)10-9-22-16-28(48-7)34(44)29(17-22)49-8/h9-10,16-18,21,23,25,27,30-32,41-42,44-47H,11-15,19-20H2,1-8H3/b10-9+/t21-,23+,25+,27-,30+,31+,32-,36-,37-,38-,39-/m1/s1
InChI KeyYZXUMPLPZGHEBG-GPPPMMNLSA-N
Experimental Spectra
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
ROESY NMR[1H, 1H] NMR Spectrum (2D, 800 MHz, CD3OD, experimental)y_kakumu@bio.uni-frankfurt.deNot AvailableNot Available2023-06-28View Spectrum
COSY NMR[1H, 1H] NMR Spectrum (2D, 800 MHz, CD3OD, experimental)y_kakumu@bio.uni-frankfurt.deNot AvailableNot Available2023-06-28View Spectrum
HSQC NMR[1H, 13C] NMR Spectrum (2D, 800 MHz, CD3OD, experimental)y_kakumu@bio.uni-frankfurt.deNot AvailableNot Available2023-06-28View Spectrum
HMBC NMR[1H, 13C] NMR Spectrum (2D, 800 MHz, CD3OD, experimental)y_kakumu@bio.uni-frankfurt.deNot AvailableNot Available2023-06-28View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, CD3OD, experimental)y_kakumu@bio.uni-frankfurt.deNot AvailableNot Available2023-06-28View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, CD3OD, experimental)y_kakumu@bio.uni-frankfurt.deNot AvailableNot Available2023-06-28View Spectrum
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
Chemical Shift Submissions
Spectrum TypeDescriptionDepositor EmailDepositor OrganizationDepositorDeposition DateView
1D NMR1H NMR Spectrum (1D, 800.15405836, CD3OD, simulated)y_kakumu@bio.uni-frankfurt.deGoethe University FrankfurtYuya Kakumu2024-05-14View Spectrum
Species
Species of Origin
Species NameSourceReference
recisa
      Not Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tetrahydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears four hydroxyl groups.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassBile acids, alcohols and derivatives
Direct ParentTetrahydroxy bile acids, alcohols and derivatives
Alternative Parents
Substituents
  • Triterpenoid
  • Ergostane-skeleton
  • Ergosterol-skeleton
  • Tetrahydroxy bile acid, alcohol, or derivatives
  • Ecdysteroid
  • 22-hydroxysteroid
  • Steroid ester
  • 20-hydroxysteroid
  • 6-oxosteroid
  • 3-beta-hydroxysteroid
  • Oxosteroid
  • Hydroxysteroid
  • 14-hydroxysteroid
  • 3-hydroxysteroid
  • 3-hydroxy-delta-7-steroid
  • Delta-7-steroid
  • Cinnamic acid ester
  • Hydroxycinnamic acid or derivatives
  • Fatty alcohol ester
  • Coumaric acid or derivatives
  • Cinnamic acid or derivatives
  • Methoxyphenol
  • Phenoxy compound
  • Methoxybenzene
  • Phenol ether
  • Anisole
  • Cyclohexenone
  • Phenol
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Alpha,beta-unsaturated ketone
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Tertiary alcohol
  • Enone
  • Cyclic alcohol
  • Acryloyl-group
  • Secondary alcohol
  • Ketone
  • Carboxylic acid ester
  • Polyol
  • Monocarboxylic acid or derivatives
  • Ether
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Alcohol
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.39ChemAxon
pKa (Strongest Acidic)9.29ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area183.21 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity187.82 m³·mol⁻¹ChemAxon
Polarizability78.1 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound168510500
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kakumu Y, Thi Nguyen MT, Mitsunaga T, Hattori H: Identification of Ecdysteroid Sinapate Esters with COX-2 Inhibitory Effects from Fibraurea recisa Using Molecular Networking and MS2LDA. J Nat Prod. 2023 Aug 25;86(8):1960-1967. doi: 10.1021/acs.jnatprod.3c00371. Epub 2023 Aug 2. [PubMed:37530540 ]