NP-MRD: Showing NP-Card for Jatropolone B (NP0331620)

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Record Information

Version

1.0

Created at

2023-05-09 20:00:12 UTC

Updated at

2024-05-14 00:40:36 UTC

NP-MRD ID

NP0331620

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Jatropolone B

Description

Jatropholone B belongs to the class of organic compounds known as indanones. Indanones are compounds containing an indane ring bearing a ketone group. Based on a literature review very few articles have been published on jatropholone B.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 46 49  0  0  0  0  0  0  0  0999 V2000
    1.3980   -1.5632    2.1026 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3128   -1.3232    1.4085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9887   -1.9932    1.7566 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8041   -0.9157    2.3623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4537    0.1204    1.5828 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7777    0.9721    0.6514 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4915    0.6709    0.0601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1328    1.5226   -0.9592 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0452    2.6623   -1.3165 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0338    1.3728   -1.6695 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3437    2.2660   -2.6871 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8973    0.3583   -1.3925 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5906   -0.5412   -0.3730 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4267   -0.3614    0.3181 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5911   -1.5922   -0.3431 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4913   -2.7543    0.0283 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8242   -0.9135   -0.9000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4034   -0.0920    0.2210 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2203   -0.0035   -1.9692 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9965    0.1323    0.2501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6939   -0.8431   -0.8500 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3173    0.8471    0.0171 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3414   -1.1388    1.9370 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2835   -2.2782    2.9137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4227   -2.6059    0.9908 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7047   -2.7014    2.5934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5366   -1.4479    3.0464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1305   -0.4009    3.1194 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1141    0.7248    2.3271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0202    2.0772    0.6082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7344    3.1203   -2.2723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0390    2.2294   -1.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0119    3.4643   -0.5499 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1847    2.1884   -3.2261 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5402   -1.6437   -1.2990 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6330   -0.8083    1.0583 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6007    0.5708    0.6042 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3036    0.4646   -0.0910 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0408   -0.5407   -2.9140 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8779    0.8431   -2.1631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6395   -1.1218   -0.9341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3920   -1.7128   -0.8441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9260   -0.3251   -1.8195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0524    0.3367    0.7031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2341    1.9005    0.3704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6793    0.7769   -1.0040 H   0  0  0  0  0  0  0  0  0  0  0  0
 18 17  1  0
 17 19  1  0
 19 12  1  0
 12 10  2  0
 10 11  1  0
 10  8  1  0
  8  9  1  0
  8  7  2  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
  2 14  1  0
 14 13  2  0
 13 15  1  0
 15 16  2  0
  5 20  1  0
 20 21  1  0
 20 22  1  0
 15 17  1  0
 13 12  1  0
 14  7  1  0
 20  6  1  0
 18 36  1  0
 18 37  1  0
 18 38  1  0
 17 35  1  6
 19 39  1  0
 19 40  1  0
 11 34  1  0
  9 31  1  0
  9 32  1  0
  9 33  1  0
  6 30  1  1
  5 29  1  1
  4 27  1  0
  4 28  1  0
  3 25  1  0
  3 26  1  0
  1 23  1  0
  1 24  1  0
 21 41  1  0
 21 42  1  0
 21 43  1  0
 22 44  1  0
 22 45  1  0
 22 46  1  0
M  END


  Mrv1652309042211172D          

 22 25  0  0  1  0            999 V2000
    3.3155    0.1222    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9865   -0.3578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7100    0.0385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4710   -0.2801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6964   -1.0737    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2164   -1.7447    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3925   -1.7878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1317   -2.5705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6790   -3.1878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3234   -2.7359    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0625   -3.5186    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7760   -2.1187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0369   -1.3360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8452   -1.1706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3732   -0.8460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3794   -0.0210    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7021   -1.3259    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9194   -1.0650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9511   -2.1124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0375   -1.8249    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3118   -2.6030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8625   -1.8332    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  7 14  1  0  0  0  0
  2 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 12 19  1  0  0  0  0
  6 20  1  0  0  0  0
  5 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0331620

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC2=C(O)C(C)=C3[C@@H]4[C@H](CCC(=C)C3=C2C1=O)C4(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C20H24O2/c1-9-6-7-13-17(20(13,4)5)15-11(3)19(22)12-8-10(2)18(21)16(12)14(9)15/h10,13,17,22H,1,6-8H2,2-5H3/t10-,13+,17+/m1/s1

> <INCHI_KEY>
BMHPRIPRPDSKRK-PGQWDYDZSA-N

> <FORMULA>
C20H24O2

> <MOLECULAR_WEIGHT>
296.41

> <EXACT_MASS>
296.177630013

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
34.2419182910283

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4R,10R,12S)-7-hydroxy-4,8,11,11-tetramethyl-15-methylidenetetracyclo[7.6.0.0^{2,6}.0^{10,12}]pentadeca-1,6,8-trien-3-one

> <JCHEM_LOGP>
4.817137680333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
17.180677897705227

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.30439343190619

> <JCHEM_PKA_STRONGEST_BASIC>
-6.0129640892914304

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
89.4493

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(4R,10R,12S)-7-hydroxy-4,8,11,11-tetramethyl-15-methylidenetetracyclo[7.6.0.0^{2,6}.0^{10,12}]pentadeca-1,6,8-trien-3-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 04-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-22         0                                  
HETATM    1  C   UNK     0       6.189   0.228   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.441  -0.668   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.792   0.072   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.213  -0.523   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.633  -2.004   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.737  -3.257   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.199  -3.337   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.712  -4.798   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.734  -5.950   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.204  -5.107   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.717  -6.568   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.182  -3.955   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.669  -2.494   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.178  -2.185   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.430  -1.579   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.442  -0.039   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       3.177  -2.475   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.716  -1.988   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.642  -3.943   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      11.270  -3.406   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      11.782  -4.859   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      12.810  -3.422   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   14                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   20                                                  
CONECT    6    5    7   20                                                  
CONECT    7    6    8   14                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   19                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13    7    2                                                  
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   12                                                       
CONECT   20    6    5   21   22                                             
CONECT   21   20                                                            
CONECT   22   20                                                            
MASTER        0    0    0    0    0    0    0    0   22    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₄O₂

Average Mass

296.4100 Da

Monoisotopic Mass

296.17763 Da

IUPAC Name

(4R,10R,12S)-7-hydroxy-4,8,11,11-tetramethyl-15-methylidenetetracyclo[7.6.0.0^{2,6}.0^{10,12}]pentadeca-1,6,8-trien-3-one

Traditional Name

(4R,10R,12S)-7-hydroxy-4,8,11,11-tetramethyl-15-methylidenetetracyclo[7.6.0.0^{2,6}.0^{10,12}]pentadeca-1,6,8-trien-3-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC2=C(O)C(C)=C3[C@@H]4[C@H](CCC(=C)C3=C2C1=O)C4(C)C

InChI Identifier

InChI=1S/C20H24O2/c1-9-6-7-13-17(20(13,4)5)15-11(3)19(22)12-8-10(2)18(21)16(12)14(9)15/h10,13,17,22H,1,6-8H2,2-5H3/t10-,13+,17+/m1/s1

InChI Key

BMHPRIPRPDSKRK-PGQWDYDZSA-N

Experimental Spectra

Spectrum Type	Description	Depositor Email	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹H NMR Spectrum (1D, 400 MHz, CDCl3, experimental)	francisco.bautista@ipicyt.edu.mx	Not Available	Not Available	2024-05-12	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, CDCl3, experimental)	francisco.bautista@ipicyt.edu.mx	Not Available	Not Available	2024-05-12	View Spectrum

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
dioica		Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indanones. Indanones are compounds containing an indane ring bearing a ketone group.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

Indanone
Aryl alkyl ketone
Aryl ketone
Phenol
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.82	ChemAxon
pKa (Strongest Acidic)	9.3	ChemAxon
pKa (Strongest Basic)	-6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	89.45 m³·mol⁻¹	ChemAxon
Polarizability	34.24 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00047940

Chemspider ID

57578299

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14059527

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Not Available

Showing NP-Card for Jatropolone B (NP0331620)

MOL for NP0331620 (Jatropolone B)

3D MOL for NP0331620 (Jatropolone B)

3D SDF for NP0331620 (Jatropolone B)

3D-SDF for NP0331620 (Jatropolone B)

PDB for NP0331620 (Jatropolone B)

3D PDB for NP0331620 (Jatropolone B)

SMILES for NP0331620 (Jatropolone B)

INCHI for NP0331620 (Jatropolone B)

Structure for NP0331620 (Jatropolone B)

3D Structure for NP0331620 (Jatropolone B)